Scaffold Ga0074648_1000897

Overview

Basic Information

• Taxon OID: 3300005512
• Scaffold ID: Ga0074648_1000897
• Source Dataset Name: Saline surface water microbial communities from Etoliko Lagoon, Greece - halocline_water
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 34393
• Total Scaffold Genes: 86
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 67 (77.91%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 10 (90.91%)
• Associated Families: 11

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Epilimnion → Saline Water And Sediment → Saline Water And Sediment Microbial Community From Etoliko Lagoon, Greece

Source Dataset Sampling Location

• Location Name: Greece: Etoliko Lagoon
• Coordinates
  • Lat. (^o): 38.4825
  • Long. (^o): 21.315
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002502	Metagenome / Metatranscriptome	553	Y
F021020	Metagenome / Metatranscriptome	221	Y
F029774	Metagenome / Metatranscriptome	187	Y
F034945	Metagenome / Metatranscriptome	173	Y
F042350	Metagenome / Metatranscriptome	158	Y
F062573	Metagenome / Metatranscriptome	130	Y
F063485	Metagenome / Metatranscriptome	129	Y
F076122	Metagenome / Metatranscriptome	118	Y
F085376	Metagenome	111	Y
F090460	Metagenome / Metatranscriptome	108	Y
F099390	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0074648_100089720	F085376	AGG	MYQVKVFNRQTNEVIMESDTFATLPEADEMLSRIGSGEGYYSIVFKLDAVWSDLVPA*
Ga0074648_100089721	F063485	AGGAG	MNLLDETELAYCDSCGNYVPVVEDEGSLVCAYEYAEYPELATVVG*
Ga0074648_100089732	F099390	GAG	VKDGTYIVRLDDEGIPMLANQINMSDGYWVSDDTGVSVHGELEPGAVLDALSLMDIQDGEIVGVWQNKEVSYIDRSYHFRNKDTALKAGEAFQQIAIWDCANSKALDIRYQ*
Ga0074648_100089733	F002502	AGGA	MNTPAIGEAYTTAKSGVSGVVQEVIANSNGTFRIRLDVNGQERWTTLKK*
Ga0074648_100089734	F029774	GAG	MARSISVKVPTSLLIQQIEERIAQIDADIEAYPAKREAFDKAEEAYKAKVANFIAAYLGENLDKIGFGYDDIIRINTGFGVYKGQSRVEVTFDTDAIVGFPERPVAPEKPNQRESFGRDYSTRKELLEKNLRILKMTSQEEVNASTYGAIMEIL*
Ga0074648_100089737	F062573	AGGA	MKKKLKEYEVLEVRGFIVHAFSEKHALDKFGRYDYVTEGDVWPEVRELGPVNMSGTGPAD
Ga0074648_100089739	F076122	N/A	MAKHEVVNKILDYLDTRRSELSNEMHAVPFESSDYQALEAMYDVYDHLMSKLEDDYR*
Ga0074648_100089742	F042350	AGGAG	VPGRETDYERGYIRGVAAMMNLITSDKVKRLDKTNVLQYAREIVEAQKEKGTPYE*
Ga0074648_100089745	F090460	AGGAG	VVNDKFSDKEYWEGIRDACEYFQDELGIEDATHTTLYQQAQEELALV*
Ga0074648_100089748	F034945	AGGAG	MGDRANVGIRGTDGNTLYLYLHWGGTDRHETVANAIAHAMSRDEDESYFTRIFISRVIDRDWDKETGVGLSVNKLSAMGDGYDVPIYNYTTKTVQLHEESWDKAGGFVKFTDIEYPRDMYLAEFGVRGVGAYV*
Ga0074648_100089749	F021020	AGGAG	MSETISLNNSIITSNYDLNIWDRRGYETEYVEEGWSIEVYKYPYLGAPYGSGDYVETIYITPEEAKRLTLGWGPDLGGDYAPDNDFWLDKETFLETYTDIPERVANLLWALPEYSQRLEVAV*