Scaffold Ga0074648_1000702

Overview

Basic Information

• Taxon OID: 3300005512
• Scaffold ID: Ga0074648_1000702
• Source Dataset Name: Saline surface water microbial communities from Etoliko Lagoon, Greece - halocline_water
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 40333
• Total Scaffold Genes: 52
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 47 (90.38%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Epilimnion → Saline Water And Sediment → Saline Water And Sediment Microbial Community From Etoliko Lagoon, Greece

Source Dataset Sampling Location

• Location Name: Greece: Etoliko Lagoon
• Coordinates
  • Lat. (^o): 38.4825
  • Long. (^o): 21.315
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002733	Metagenome / Metatranscriptome	534	Y
F028792	Metagenome / Metatranscriptome	190	N
F029934	Metagenome	187	N
F079341	Metagenome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0074648_100070214	F079341	GGA	MSKLVWKRGDGWVQYNPPRSHPSYEEWQKLKEKDAEKVRS*
Ga0074648_100070231	F028792	GGAG	MSNRGDYKVRVRMTTEREVIVNADGFDEAEAKALREAVALVDGYDAEVLWALEHGSLSDWEKSNVNSN*
Ga0074648_100070232	F029934	GGAG	MSTVTKTCLACDGGGIAEYDKPVTDFANGGWIDSTYGKCDVCDGEGDLHVLSEFTSLDILAFLHEAATILENADIVDSTLDNMYGHIRDAKDMMREYIKFHGYDGDDR*
Ga0074648_100070235	F002733	AGGAG	MAKQTKLWIELTPTEANALMVMLDSEMDNRFYYSSVDLDNWENLDLEAYKFLAFHKFKTWYMENFDG*