Scaffold Ga0068671_1022138

Overview

Basic Information

• Taxon OID: 3300005503
• Scaffold ID: Ga0068671_1022138
• Source Dataset Name: Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP NP_0600 MetaT (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5183
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic Microbial Mat → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Source Dataset Sampling Location

• Location Name: USA: Wyoming: Yellowstone National Park
• Coordinates
  • Lat. (^o): 44.963
  • Long. (^o): -110.715

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007404	Metagenome / Metatranscriptome	351	Y
F014738	Metagenome / Metatranscriptome	260	Y
F075533	Metagenome / Metatranscriptome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068671_10221384	F014738	GAGG	MKLDIALLIVAFVLALVHPDAAQVAATAVLLLLVTRVERGRKARKKKSAPASC*
Ga0068671_10221385	F007404	GGAGG	VDITEIFRLLAAGHTGLSALDYVWNALFGAIGAATAYLADTEGEVLLPRYDAQSNSVELGALGRVLVGAGAGVLVGYSGYIPFIAGVVAPTLLPVLVDKIAGFVGRGADET*
Ga0068671_10221388	F075533	N/A	TSVTFHVTVNNTGAYSGHAIDEGLLTSALTGRGGCCDIKLPTGTNVSIAKPDANLREIVEQSTDEYAQVRYRRKRFIRDRTLPTIDFRADSPLVWRFPETTRVVDISKAPNRVFGQYRGYWTDHLTATTTILPLESRRQSLAWRVASVGEYGSKAIAEARRDEAAAAFDRQIAPITIELDNARYELMTREGITVPNWAADVSDYAIVSGYFRNAKITSRTISRERTTYTVSFNPDDFVNALR*