Sample 3300005503

Basic Information
IMG/M Taxon OID	3300005503 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0046783 \| Gp0111633 \| Ga0068671
Sample Name	Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP NP_0600 MetaT (Metagenome Metatranscriptome)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Sample Name

Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP NP_0600 MetaT (Metagenome Metatranscriptome)

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	78987400
Sequencing Scaffolds	22
Novel Protein Genes	32
Associated Families	24

Dataset Contents

Total Genome Size

78987400

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	14
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → Herpetosiphonales → Herpetosiphonaceae → Herpetosiphon → Herpetosiphon geysericola	1
All Organisms → cellular organisms → Bacteria	5
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Candidatus Thermofonsia → Candidatus Thermofonsia Clade 3 → Candidatus Thermofonsia Clade 3 bacterium	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

Not Available

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → Herpetosiphonales → Herpetosiphonaceae → Herpetosiphon → Herpetosiphon geysericola

All Organisms → cellular organisms → Bacteria

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Candidatus Thermofonsia → Candidatus Thermofonsia Clade 3 → Candidatus Thermofonsia Clade 3 bacterium

Ecosystem Assignment (GOLD)
Name	Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa
Type	Environmental
Taxonomy	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic Microbial Mat → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Ecosystem Assignment (GOLD)

Name

Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Type

Environmental

Taxonomy

Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic Microbial Mat → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	aquatic biome → hot spring → microbial mat material
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

aquatic biome → hot spring → microbial mat material

Earth Microbiome Project Ontology (EMPO)

Free-living → Non-saline → Water (non-saline)

Location Information
Location	USA: Wyoming: Yellowstone National Park
Coordinates	Lat. (^o)	44.963	Long. (^o)	-110.715	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Location Information

Location

USA: Wyoming: Yellowstone National Park

Coordinates

Lat. (^o)

44.963

Long. (^o)

-110.715

Alt. (m)

N/A

Depth (m)

N/A

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F000642	Metagenome / Metatranscriptome	965	Y
F002970	Metagenome / Metatranscriptome	517	N
F004307	Metagenome / Metatranscriptome	444	Y
F004925	Metagenome / Metatranscriptome	418	Y
F005028	Metagenome / Metatranscriptome	414	Y
F005302	Metagenome / Metatranscriptome	405	Y
F005631	Metagenome / Metatranscriptome	394	N
F006252	Metagenome / Metatranscriptome	377	Y
F007404	Metagenome / Metatranscriptome	351	Y
F008499	Metagenome / Metatranscriptome	332	Y
F010840	Metagenome / Metatranscriptome	298	Y
F014738	Metagenome / Metatranscriptome	260	Y
F016404	Metagenome / Metatranscriptome	247	N
F025895	Metagenome / Metatranscriptome	199	Y
F032180	Metagenome / Metatranscriptome	180	Y
F037517	Metagenome / Metatranscriptome	167	Y
F056643	Metagenome / Metatranscriptome	137	N
F061617	Metagenome / Metatranscriptome	131	N
F065815	Metagenome / Metatranscriptome	127	N
F073601	Metagenome / Metatranscriptome	120	Y
F075533	Metagenome / Metatranscriptome	118	Y
F075804	Metagenome / Metatranscriptome	118	N
F081941	Metagenome / Metatranscriptome	114	N
F098323	Metagenome / Metatranscriptome	104	Y

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0068671_1000275	Not Available	859	Open in IMG/M
Ga0068671_1002167	Not Available	2078	Open in IMG/M
Ga0068671_1003339	Not Available	2852	Open in IMG/M
Ga0068671_1010034	Not Available	550	Open in IMG/M
Ga0068671_1017795	Not Available	1727	Open in IMG/M
Ga0068671_1018147	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → Herpetosiphonales → Herpetosiphonaceae → Herpetosiphon → Herpetosiphon geysericola	3427	Open in IMG/M
Ga0068671_1020658	Not Available	1309	Open in IMG/M
Ga0068671_1020863	Not Available	781	Open in IMG/M
Ga0068671_1022138	All Organisms → cellular organisms → Bacteria	5183	Open in IMG/M
Ga0068671_1022594	Not Available	608	Open in IMG/M
Ga0068671_1023506	Not Available	914	Open in IMG/M
Ga0068671_1024201	Not Available	1265	Open in IMG/M
Ga0068671_1024706	All Organisms → cellular organisms → Bacteria	4730	Open in IMG/M
Ga0068671_1025657	Not Available	924	Open in IMG/M
Ga0068671_1032967	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	895	Open in IMG/M
Ga0068671_1034270	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Candidatus Thermofonsia → Candidatus Thermofonsia Clade 3 → Candidatus Thermofonsia Clade 3 bacterium	5829	Open in IMG/M
Ga0068671_1120166	Not Available	671	Open in IMG/M
Ga0068671_1126714	Not Available	755	Open in IMG/M
Ga0068671_1133003	All Organisms → cellular organisms → Bacteria	2473	Open in IMG/M
Ga0068671_1134849	All Organisms → cellular organisms → Bacteria	1591	Open in IMG/M
Ga0068671_1138291	Not Available	574	Open in IMG/M
Ga0068671_1138427	All Organisms → cellular organisms → Bacteria	2405	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0068671_1000275	Ga0068671_10002751	F061617	MAKTLNALANRKKVRTRQILNQSNLYYLNNRRLSFLPKIFLGFSIVLVICGLLWYLNVFDLQTVVGQPVSHQSEQLTALDLIRQLNSNTTSQANTIDEQTANWQSLNSDKLVLLTAQNGATCALSLQPNPPENIKPIAQSQPQGWWLPSHCAVSELVAVQIVRLNSTEANKLAQAANLIQVQNLDGLDTYAIIYFNQPSKTSFDLKKYLKSLTANIFTDRFYFNTTSAHDTKKIGDWIYYLDGECAGPSSYRDPCKLWRSDRNTGTIELLKK
Ga0068671_1002167	Ga0068671_10021672	F006252	MRSFEEQAAFGLPYERAIAQTAALLLYPNRPGLMLARLDAYAPLDYLLLDGDAPVAAFEVKRRAVRSDAYRTTILPDSVYVAAKRLTVPAYAAILFTDGLCIFDVVRTPSTVRWLRDRRGRARKHREYVINGRMVKCEAVHQ*
Ga0068671_1003339	Ga0068671_10033392	F032180	MWWKIEDVPERELEQWATDVTRVERAAKRDVEARAAGAFVIYYLNDELRYAAGREAPAGAYVVERWVRGKRKWRLVG*
Ga0068671_1003339	Ga0068671_10033393	F005028	MRDDDLRAAMQFFAGRLRGAQLDPTRLLRWTRHKLRNDAQAVAELMLTIGYRATYIRYFLRYHIRNVDPETDSEDVVLVVADLQSAAKKLRQPYRDLAAVCLRWGYVHETVVQMLEKALERKR*
Ga0068671_1003339	Ga0068671_10033395	F008499	MKSRSKREPRWKRKEREAVKALQAIFGRVSDPSLARLLTSTGRVGRQTRFGVDGFVGDDPGFVVEVKARKKMLTKPAVQALLQTIDRAAQFDRIPLFVVVFGDDVPARTENGARVDREWVMMPRRVLDELVGKEKKNE*
Ga0068671_1003339	Ga0068671_10033396	F004307	MFKELITHNSGRERPALNGAYIGRFLGVSERERPTFETRNDPQPEYEQVFVFEFEIEDPELDAPVRVSKWVRKPARLSHPGKGGKVTNLYKVLAALYGVPQMTDEQLAGAEDFVQNVAVGREYQLTLETKPSGWIEIVHIAPARRLRQRKEATIDEVPF*
Ga0068671_1010034	Ga0068671_10100341	F004307	MFKELVKLGDSNDERPVLNGAYIGRFLGVKERQRPTFDTRLNPEPELEDVFVFEFEVDDEELPHPIRVAKWVRKPPQLSHPGKNGKVSNLYKVIAALYGVSQMTDEQLQNAEEFVTSVIGREYQLTIETKPSGWYEIIHIAPVRRARRKEVMSGNEEVPF*
Ga0068671_1017795	Ga0068671_10177953	F005302	MAHFNVIQGLYAGDFAVEISANGTIWTAVSDATVKIDDVELSRPSGEAYVGGSSDYATVTVGKREPVEITLTFLYNETTNSASNTIYDYFESPTPVLAVRWSPTGVKPNARAYATSNDGTTTGLGVITNVTLSALDPSEAEPYVAMVTVRAPTLRQYVLGAAPVDLSG*
Ga0068671_1018147	Ga0068671_10181472	F005631	MQVSVSVDVNNALRKLLPRTAQIEAALDAGAAAAHSVMQVYPSPPAGSRYRRTGNLRQKLRLRKLSRTSRVVENTASYARYVYGMPQARVHRGRWASAVDAAEAARKEAVAVLQGR*
Ga0068671_1020658	Ga0068671_10206582	F005302	MAHFGVIQGLYAGNFAVEISTNGTIWTAVSDATVKIDDVELSRPSGEAYVGGSSDYATVTVGKREPVEVTLTFLYDETTNSATNTIYDQFESPTPVLAVRWSPTGVKPNARAYATSNDGTTTGLGVITNVTLSALDPSEAEPYVAMVTVRAPTLRQYVLGAAPTDLS*
Ga0068671_1020658	Ga0068671_10206583	F056643	GMGRGVADTATALVEYIEDYVAKLRFAWLQRGDVQLINVSGVVDVIKYGERAYEGVTMTTRFAHLVRSPSV*
Ga0068671_1020863	Ga0068671_10208631	F010840	GAPSGEREREVNRMNLPFDKPLNKVTNGALAAALVVVVAWALREFVGVDLPAEVQSALALIVGFGISYLVPLSAAEAEAIAQAYYRK*
Ga0068671_1020863	Ga0068671_10208632	F016404	VETDALTEENRNAVLWALLHLALDPDAPAGARVAAARLFLAQFGETNAERDVLVVVDEAAFVETV*
Ga0068671_1022138	Ga0068671_10221384	F014738	MKLDIALLIVAFVLALVHPDAAQVAATAVLLLLVTRVERGRKARKKKSAPASC*
Ga0068671_1022138	Ga0068671_10221385	F007404	VDITEIFRLLAAGHTGLSALDYVWNALFGAIGAATAYLADTEGEVLLPRYDAQSNSVELGALGRVLVGAGAGVLVGYSGYIPFIAGVVAPTLLPVLVDKIAGFVGRGADET*
Ga0068671_1022138	Ga0068671_10221388	F075533	TSVTFHVTVNNTGAYSGHAIDEGLLTSALTGRGGCCDIKLPTGTNVSIAKPDANLREIVEQSTDEYAQVRYRRKRFIRDRTLPTIDFRADSPLVWRFPETTRVVDISKAPNRVFGQYRGYWTDHLTATTTILPLESRRQSLAWRVASVGEYGSKAIAEARRDEAAAAFDRQIAPITIELDNARYELMTREGITVPNWAADVSDYAIVSGYFRNAKITSRTISRERTTYTVSFNPDDFVNALR*
Ga0068671_1022594	Ga0068671_10225942	F005302	MAHSGVVQGLYAGNFAVEISTNGTTWTAVSDAIVKIDDVELSRPSGEAYVGGASDYATVTVGKREPVEITLTFLYSEAPNATAFVIYDQFESVNPALAVRWSPVGIKSNAIAFATSNDGVTTGLGVITNVTLSALDPSEAEPYVAMVTVRAPTLRQYVLGAAPTD
Ga0068671_1023506	Ga0068671_10235062	F073601	LGWQGRLVGAGCPLLGMSLALGRAMLQAKATCLVMVLPAKRREGQRMFWVLHFAWCCAIKIMECGSIIRPLPVEQKALAGMGVLLQQG*
Ga0068671_1024201	Ga0068671_10242013	F008499	VGTRKSRSEPRWKRKERKVIKFLQAAFGRVSDPALARLLTRTGRVGHLTRFGFDGIVGNEPGFIVEVKARKGMLTKQTIEALLQVVDRAAQFDRIPLLAVVLSDDVPARTASGAKVDREWVLIPLRELKRLMGKETSYE*
Ga0068671_1024201	Ga0068671_10242014	F004307	GVKERQRPTFDTRLNSEPELEDVFVFEFEVDDEELPQPIRVAKWVRKPQRLSHPGKNGKVTNLYKTLASLYGVAQMTDEQLAGAEEFVMSAVGREYQLTIETKPSGWYEIIHVAPVRRARRKEVMGGNEEVPF*
Ga0068671_1024706	Ga0068671_10247061	F073601	VGAGCPLLGVSLALGRAMLQAKATCLVMALPAKRREGQRMFWVLHFAWCCAIKIIECGSIIRPLPVEKRALAGKGVLLQQG*
Ga0068671_1025657	Ga0068671_10256572	F000642	MQVVSIALALCAVAAALWYMRRREAGAGRLRGWLLLWDELGGWRALSATYGDSGIVADGVTYPASLPVVRVGRDLVWIARCDSAALVEHQALERARESAALASLWRGGGQWLDFLRVAGVVLPAVFAYFTWAQVGALQALVAQILALVGEGR*
Ga0068671_1032967	Ga0068671_10329671	F005631	MKLNVAVDIDNALRKLLPQTARIEAALDAGAAAAHSVMQIYPPPPAGSRYRRTGNLRQKLRIEKLSRTSRIVENTASYARFVYGMPQARVHRGRWASVVDAAEAAR
Ga0068671_1034270	Ga0068671_10342701	F002970	GLTAQYNSVVVPVRRLTSQPNWSDAAQLPVRIIPALGGLRLIEGGVYTPTRATRAVWEIDDLLLVRDVGMGRGVADTASALVNYIEDYVARLRSAWLARGDVQLLNVSGIVDVVKYGERAYEGATVTTRFAHLVRAPSA*
Ga0068671_1034270	Ga0068671_10342702	F005302	MAHSGVISGLYAGNFAVEISTDGTTWTAVSDATVKIDDVEMTRPSGEAYVGGSSDYATITIGKREPVEITLTFLYSEATGAAATAIYDQFESATPRLGVRWSPTGLVASARAYATSNDGNATGLGVITGVTLSALDPSEAEPYVMMVTVRTPTLRQYAIAATNPTNLA*
Ga0068671_1034270	Ga0068671_10342705	F037517	MRVRQIGTLVFDSNTNIVVDADVQDAPGIGFHINNLYDPQPFAVEIAFKRATRQQALEAVNALARELFSYAQRRQDLRAGIAGGAPVIIEDAAGGATLKSYLRDGSVTLLGVETTATGVIARVRATGTLVASFINYAAATTSLTSLLPYERRVIALSGASDAYLYKNNLFYIVSNMSGLYNALLAVETLESATAASRIAAINPATATSGITLENWNAGWATLTRANFSSATNGTITFNITTALPFDVYRLFVEISCPSTPESTARYSVAWGGQPQIYETIAGDRSWYTPALFVRREAAMQLTLNIENVPTGTLAMPLILIPTDGVFVWNVITSPTFASFHSVAPQSDPLRPLETSPDGAVYGTPGFVSGRNIAVFNGVMAQTISGASASLTITSRRIEPAAFA*
Ga0068671_1120166	Ga0068671_11201661	F081941	FGILKIEPTNYAANQFFSALEVLIAIVLSLFIISGFHFILIQLSNLPYSDYKLEITTAIFFVLDFLLVIPTTFTTTQFELSPSLKLILDTIYMMTGSIYLVLAAGVFYMDLEDNKILAKRYTRWSVLVFLFFFFIIAMETVRRSMELNILLTFTGINLLLILVIMFADLKSLLNPYPNYQGKTNSIEIISFLLLSATILIGKTLHLVFVSSIFG*
Ga0068671_1126714	Ga0068671_11267142	F004925	EQSGPAADARTRPHRSRIIPGDWGKVGSGWLARPLGSPALGPGGKGRIHQFLWRRSRAVSDAKQELRGKGR*
Ga0068671_1133003	Ga0068671_11330033	F075804	MLKHISSSLSRSKKYRLWQEAYWLVLLNQALKTFTEQHLQLKNPEIRAFVRLQGQVLHVKIAAKEPTVLAALKIAQKALLDFLHQNLPQKAQLVTQLKISFLVK*
Ga0068671_1134849	Ga0068671_11348492	F025895	MNELIAWIIAAAVILLLANTNVADGLFDALDLSDNLRRAAEWTRGVRGAPAVVSAASFFVLAYVFGALAYRYDLVPTWRFIQPVAQDVLSSGAEWLTLFAVFLTLLPTLIELASVGLVQRSIKALEYMTYFFIFFDLVTDYTEAAALVEVWQRSGLFDPLPSLIANAAIVLAKISWTFAASFAFEFLAILFAVTGLLLAANVRAPTAGGGMR*
Ga0068671_1138291	Ga0068671_11382911	F065815	NKPMQPETNNSNPQANQPTEETSVTDAKKNNTSTPEVEQQSKSGFYQDLNSVLLVTILSLLIYTIVGSGLSWIVSWGLAQANLYPWVFNQSPILLWAIFGLVSMLIIGVTMVQVESLVETRILPKLQKFSQPTLLLVNFLVLMGLILGMYWLVSNFVNYLNITFWLK*
Ga0068671_1138427	Ga0068671_11384274	F098323	MLKNKFWVLLVIFALFGFINTSIPVWTQENTTTQFDNAILAKNQQLIVPIGRADTSVDPACKNLINEIVKCDSGNGSCVVLKFRKATEDDKERYRQLTENAKKCVGSNSNNLDDRQKLDLINKVCLVLPAASSNDRTFFCQACIGRGVTKPSNWTDQDIVDKCNSTIPANNSSKKLVNRKIDQNGQVKEVLATRINVKEKPLGVARATEDNFYLTVANQ

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300005503: Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP NP_0600 MetaT (Metagenome Metatranscriptome)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences