NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0068671_1003339

Scaffold Ga0068671_1003339


Overview

Basic Information
Taxon OID3300005503 Open in IMG/M
Scaffold IDGa0068671_1003339 Open in IMG/M
Source Dataset NameAnoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP NP_0600 MetaT (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2852
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic Microbial Mat → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Source Dataset Sampling Location
Location NameUSA: Wyoming: Yellowstone National Park
CoordinatesLat. (o)44.963Long. (o)-110.715Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004307Metagenome / Metatranscriptome444Y
F005028Metagenome / Metatranscriptome414Y
F008499Metagenome / Metatranscriptome332Y
F032180Metagenome / Metatranscriptome180Y

Sequences

Protein IDFamilyRBSSequence
Ga0068671_10033392F032180AGGAMWWKIEDVPERELEQWATDVTRVERAAKRDVEARAAGAFVIYYLNDELRYAAGREAPAGAYVVERWVRGKRKWRLVG*
Ga0068671_10033393F005028GAGGMRDDDLRAAMQFFAGRLRGAQLDPTRLLRWTRHKLRNDAQAVAELMLTIGYRATYIRYFLRYHIRNVDPETDSEDVVLVVADLQSAAKKLRQPYRDLAAVCLRWGYVHETVVQMLEKALERKR*
Ga0068671_10033395F008499AGGAMKSRSKREPRWKRKEREAVKALQAIFGRVSDPSLARLLTSTGRVGRQTRFGVDGFVGDDPGFVVEVKARKKMLTKPAVQALLQTIDRAAQFDRIPLFVVVFGDDVPARTENGARVDREWVMMPRRVLDELVGKEKKNE*
Ga0068671_10033396F004307AGGAMFKELITHNSGRERPALNGAYIGRFLGVSERERPTFETRNDPQPEYEQVFVFEFEIEDPELDAPVRVSKWVRKPARLSHPGKGGKVTNLYKVLAALYGVPQMTDEQLAGAEDFVQNVAVGREYQLTLETKPSGWIEIVHIAPARRLRQRKEATIDEVPF*
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