Scaffold Ga0068673_101098

Overview

Basic Information

• Taxon OID: 3300005484
• Scaffold ID: Ga0068673_101098
• Source Dataset Name: Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP NP_0830 MetaT (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2806
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic Microbial Mat → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Source Dataset Sampling Location

• Location Name: USA: Wyoming: Yellowstone National Park
• Coordinates
  • Lat. (^o): 44.963
  • Long. (^o): -110.715

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005631	Metagenome / Metatranscriptome	394	N
F082732	Metagenome / Metatranscriptome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0068673_1010982	F005631	N/A	MKLNVAVDIDNALRKLLPQTARIEAALDAGAAAAHSVMQIYPPPPAGSRYRRTGNLRQKLRIEKLSRTSRIVENTASYARFVYGMPQARVHRGRWASVVDAAEAARVEAEKVLRGR*
Ga0068673_1010984	F082732	AGGAGG	MTEIVMNQSELAAEIAARLRDEVAAAVKAQRVGVATELDEDTAETGASFGDFLKSVAYNDTRRLRAIYKSAKALDETTGAGGGFLVPTQFEQRIRAVGAPMLFDQLVAANRGPLTLRTNAAELALPVLEQDQTPDVESSAL