Scaffold Ga0074646_100604

Overview

Basic Information

• Taxon OID: 3300005470
• Scaffold ID: Ga0074646_100604
• Source Dataset Name: Saline benthic water microbial community from Etoliko Lagoon, Greece
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 11939
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (43.75%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Dependentiae → unclassified Candidatus Dependentiae → Candidatus Dependentiae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water And Sediment → Saline Water And Sediment Microbial Community From Etoliko Lagoon, Greece

Source Dataset Sampling Location

• Location Name: Etoliko Lagoon, Greece
• Coordinates
  • Lat. (^o): 38.468307
  • Long. (^o): 21.333032
  • Depth (m): 25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034486	Metagenome / Metatranscriptome	174	Y
F044910	Metagenome	153	Y
F054439	Metagenome	140	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0074646_10060414	F044910	N/A	MLQDAHSKKIAIPIAAEVGTNTIVAAQDDAYIYIHELIGDLASAGNLIVKAGSRTLASFTLDGGQGITEQDEPGMDGVPRFECKPGEAFILEVTGGTFNGALDYSFRY*
Ga0074646_1006043	F054439	AGGA	MVYLGKRGSSMKQMAYARQLFGAKGKNKKQIALDVGYSPNVANSIKTHIENKPGFNYAMSALAVESNNLALEALSEFKARGLKDFSNKELTGALNAISNAWSKFNAPAIEQSNNAKEGNKLRKVILQQIENQTVNNNVKEEEKPRVIDVEVDDPNDF*
Ga0074646_1006048	F034486	N/A	MSENEQSLKQKKIALAQSEHAPVIIELMKDCLSQVPIIADTEWKTIVNAITLDVQSTMMRNMVDRLESIRKGNLHKES*