3300005470: Saline benthic water microbial community from Etoliko Lagoon, Greece

Overview

Basic Information

• IMG/M Taxon OID: 3300005470
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0058670 | Gp0054037 | Ga0074646
• Sample Name: Saline benthic water microbial community from Etoliko Lagoon, Greece
• Sequencing Status: Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 79630308
• Sequencing Scaffolds: 16
• Novel Protein Genes: 19
• Associated Families: 16

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	2
Not Available	9
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Dependentiae → unclassified Candidatus Dependentiae → Candidatus Dependentiae bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
All Organisms → Viruses → Predicted Viral	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophorhabdales → Syntrophorhabdaceae → Syntrophorhabdus → unclassified Syntrophorhabdus → Syntrophorhabdus sp. PtaB.Bin047	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Saline Water And Sediment Microbial Community From Etoliko Lagoon, Greece
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water And Sediment → Saline Water And Sediment Microbial Community From Etoliko Lagoon, Greece

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): aquatic biome → lagoon → saline water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Hypersaline (saline)

Location Information

• Location: Etoliko Lagoon, Greece
• Coordinates
  • Lat. (^o): 38.468307
  • Long. (^o): 21.333032
  • Alt. (m): N/A
  • Depth (m): 25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000388	Metagenome / Metatranscriptome	1201	Y
F008498	Metagenome / Metatranscriptome	332	Y
F019411	Metagenome / Metatranscriptome	230	Y
F026738	Metagenome / Metatranscriptome	197	Y
F034486	Metagenome / Metatranscriptome	174	Y
F040718	Metagenome / Metatranscriptome	161	Y
F044785	Metagenome	154	Y
F044910	Metagenome	153	Y
F045436	Metagenome	153	N
F054439	Metagenome	140	Y
F057299	Metagenome / Metatranscriptome	136	Y
F061366	Metagenome	132	Y
F076867	Metagenome	117	N
F077964	Metagenome	117	Y
F085346	Metagenome	111	Y
F103996	Metagenome	101	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0074646_100010	All Organisms → cellular organisms → Bacteria	227194
Ga0074646_100108	Not Available	54194
Ga0074646_100191	All Organisms → cellular organisms → Bacteria	33020
Ga0074646_100220	Not Available	30084
Ga0074646_100604	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Dependentiae → unclassified Candidatus Dependentiae → Candidatus Dependentiae bacterium	11939
Ga0074646_101079	All Organisms → cellular organisms → Bacteria → Proteobacteria	7240
Ga0074646_106058	All Organisms → Viruses → Predicted Viral	1909
Ga0074646_107634	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1612
Ga0074646_108574	Not Available	1478
Ga0074646_111483	Not Available	1188
Ga0074646_112758	Not Available	1098
Ga0074646_115190	Not Available	957
Ga0074646_116499	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophorhabdales → Syntrophorhabdaceae → Syntrophorhabdus → unclassified Syntrophorhabdus → Syntrophorhabdus sp. PtaB.Bin047	896
Ga0074646_122405	Not Available	686
Ga0074646_126265	Not Available	597
Ga0074646_130804	Not Available	515

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0074646_100010	Ga0074646_10001033	F076867	MDEKNSNLVEIAKKKRYIALVEKLQRGSLSSKELKELEEFEKSGQRPSGIIDGTVDLPTLCVYFEKSPRMIRRYVQQGMPVLRDASGEIARFKVGEVFKWFYKKQGSEEDNGKDYWDKEYRKNRAKLSEIELKQKEGEVIPFEDHVSIVKNQIRGIKAGFLRLPKHIAPKLYQQDPKVICEVLDHEIRYIIEQFAGKKNADKTGKRNS*
Ga0074646_100108	Ga0074646_100108103	F000388	MKVIKVTKEYFQTEDEKVYFFEPLEKEISVEDMQKIVDTNKKLVKELKDENK*
Ga0074646_100191	Ga0074646_10019123	F044785	MLKKEAKWQTIFNQYVKEKRLYGFFELKQTDKETFPFSKIEKVQWEGLQATEKSGIVWKLSDEISRPKPCDSFSIPPLPSYLIIKFKKEFCLIRFEEIVKLRDKGVISISRSTAEKLSEKIIKI*
Ga0074646_100220	Ga0074646_10022016	F008498	MLPTGAGLKRKLNLFNMGSVTYKNQPAIDKTKGSVPLAGTSHIYRVQKKLWNDSIEDVLQGLFIGKTLHVCCGKSLLGDVRLDADAENNPDIICDASNMKDFVKDNEFETVICDPPYNGKFQWNHDLLKELARVASKRIIFQHWFIPANPSGTYKKAQEKFLLSDVLVWQPKTYFGRVQVVSVFDAV*
Ga0074646_100604	Ga0074646_10060414	F044910	MLQDAHSKKIAIPIAAEVGTNTIVAAQDDAYIYIHELIGDLASAGNLIVKAGSRTLASFTLDGGQGITEQDEPGMDGVPRFECKPGEAFILEVTGGTFNGALDYSFRY*
Ga0074646_100604	Ga0074646_1006043	F054439	MVYLGKRGSSMKQMAYARQLFGAKGKNKKQIALDVGYSPNVANSIKTHIENKPGFNYAMSALAVESNNLALEALSEFKARGLKDFSNKELTGALNAISNAWSKFNAPAIEQSNNAKEGNKLRKVILQQIENQTVNNNVKEEEKPRVIDVEVDDPNDF*
Ga0074646_100604	Ga0074646_1006048	F034486	MSENEQSLKQKKIALAQSEHAPVIIELMKDCLSQVPIIADTEWKTIVNAITLDVQSTMMRNMVDRLESIRKGNLHKES*
Ga0074646_101079	Ga0074646_1010798	F061366	MSWGVTIRNSVAIGLGGIISLFSGYGRDNDLINLATESGDNLVQEDGGFIII*
Ga0074646_101168	Ga0074646_1011684	F103996	MKFLEGYKTYIVVVVAVIFNGLVAMGYVPAESLGLVNTILGFLGLGAVRAGIAGK*
Ga0074646_106058	Ga0074646_1060582	F077964	MSQQVAKLSGNGGPNMKKLITIITAILFLSPAIALAETAESKTSPPTIQKIAPKTYYYNYNIQEVQKVPEGGGEAETFYQYNYVTIKGKPTKMKVLNAIAEAESSTNTEAVEGVAVERTAAQEKLAQISAMTYAQIDTHIDNTFSNLSEAQKTSLKKLYKAVLALIKQMDLE*
Ga0074646_107634	Ga0074646_1076341	F040718	NYPGLMVCKDDLDEYDPYRLAPRTPDQIVLPFTRPDVDIATDPAGVITEDGDEFLTTEDGEKYLEF*
Ga0074646_108574	Ga0074646_1085742	F000388	MKVIKVTKDYFQTEDEKVYFFETLEKEISVEDMQKIVDANEKLIKEMKTNECIKPI*
Ga0074646_111483	Ga0074646_1114832	F045436	MSVARQIRAKANVKDYGLENPFVTGLLRRHGTHRIRLYHDDMTLRTFENQQEFIQYGVGIVGARLESRQEMASMVMNGKTVVVLARRRTYLRR*
Ga0074646_112758	Ga0074646_1127584	F077964	PNMKKLIAIITAILFLSPAIALAETAESKTSPPTIQKIAPKTYYYNYNIQEVQKVPEGGGEAETFYQYNYVTIKGKPTKMKVLNAIAEAESSTNTEAVEGVAVERTAAQEKLAQISAMTYTQIDTHIDNTFSALSEAQKTSLKKLYKAVLALVKQLDLE*
Ga0074646_115190	Ga0074646_1151902	F085346	MFKESNRRMNQIMKGEFQSDMVASAQREFEGQIKLVNAVVNAFGIASKNKRAMTGLERMNIMDQTTSVDLMLGDPEVDKVKCPLKDELITRAECLDYSGSHFDDCNGCDIGVKTKNMLLKDSAYA*
Ga0074646_116499	Ga0074646_1164992	F026738	MADRATTLSGRFQKVTLGATSKILGAGTYTITGITRKTIDASEFGVDVDIFEFASADGGTIQLSDCVYDPTNPEQNTLRDCVENATDLINSTTSGIRFWIDSTSYLTIGTSGVILMTKAGAVNADRNGLAKTSFEGQVSGAFMYIV*
Ga0074646_122405	Ga0074646_1224052	F057299	MANTFGEKELRTDWDELTDSDSTKAVGHEQTLRATEGTFVFRRDRVGIE*
Ga0074646_126265	Ga0074646_1262652	F019411	MIDEQRVKTIFDQERENYRYRNKLTIDHVKTLEKQIEILIKDKAMLQDQLDKYIDKEVEKR*YTK*
Ga0074646_130804	Ga0074646_1308042	F000388	MKVIKVTKEYFETEDEKVYFFEPLEKEISIEDMQKIVDANEKLVKRLKDECTKSI*