NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0070707_100000699

Scaffold Ga0070707_100000699


Overview

Basic Information
Taxon OID3300005468 Open in IMG/M
Scaffold IDGa0070707_100000699 Open in IMG/M
Source Dataset NameCorn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)33360
Total Scaffold Genes36 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)22 (61.11%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan: Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009132Metagenome / Metatranscriptome322N
F024516Metagenome205N
F031428Metagenome182N
F032621Metagenome179N
F079889Metagenome / Metatranscriptome115N

Sequences

Protein IDFamilyRBSSequence
Ga0070707_10000069910F031428GAGGMNAARLGESDLAKILRGVAVVLAAALMILPAYINYEGWKFGFSPVVMMAISLQAFAIGIVVFILAVGKDRLAPKSQPQ*
Ga0070707_10000069921F079889GAGLSQRPSDPNHPYCHYCEESTYHEYDPYFHAWVCQTCFGGMIRVDKKDPLSAIRAELNSLALHVAKSGYNAEVKGKLREIAVRMQKLAE*
Ga0070707_10000069929F024516N/AMIFLGPSDPLGGRDLKRGYIVIYAQFGLIFLFIYGLSAEYRSNAYQQDWVSNNAPWLQYFLNGYLAAMLLGIFIGGGVLLAADYWRTKDKKVR*
Ga0070707_1000006993F032621N/ALRLGFGVLAGVIYNLAGFGSLGVGLGTLSMITVGIGVYSVSIFLVKNLLGYGPEILKGPNKHVTIGMGSYVIWMIFTTILLYTVLNPHPS*
Ga0070707_1000006998F009132GAGGMVKRKIVDSSPEDLSNLQRLVGPENVLAHCAGVNYQVYVTDTRLLVGKRFATGEKFMNVPTASINTLELITKSLLPPLTFAVLGAIASFLIWWFPGTRMLPLPVFPYDVAMLAGLVVFVGSLIVAWWRVGIAVLRIRVDDSQNPITVKLVSTSKAEAVFKALKG*
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