Scaffold Ga0070707_100000074

Overview

Basic Information

• Taxon OID: 3300005468
• Scaffold ID: Ga0070707_100000074
• Source Dataset Name: Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 88035
• Total Scaffold Genes: 97
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 63 (64.95%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Archaea (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan: Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002498	Metagenome / Metatranscriptome	553	Y
F006583	Metagenome / Metatranscriptome	369	N
F012005	Metagenome / Metatranscriptome	284	N
F022626	Metagenome / Metatranscriptome	213	N
F028125	Metagenome	192	N
F085526	Metagenome / Metatranscriptome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0070707_10000007411	F012005	GAG	MKFGLVVGGALLLITGLLAYSMIPNFHMVPLQSAQTIVNLKPIAVSSASLSETPQNVTLFPGKENDLLVNLTVSTQMGSPSSVQFKLFPEGAFQSCMLSSQPRGCLVNQAVSNASLRIPLNASTTYYFGFDNSGSSSPKQVMLSASLVGSSVNTIVARDGGFNFAGLGMSLIGLLVALYGVFAKTVIPWE*
Ga0070707_10000007416	F085526	GGA	MVDFHYFIFIINADAAVFGVIVFLMSYIALRLVYRMWRRSLRCPHCGEVYAAKHIVHIPEKTMPNTLWT*
Ga0070707_10000007440	F006583	GAG	MVNCSGCSGIIHRDEPVSAAFSQEGKRSYFHKGCEEKAEYLSRWREEAAWAFRPVRLIVSDWEACSPKKHLGVWQSIFIARRDEDIWCPDCGLKIARHEGLTCTACGSHAIVVGVESTKMVFTHRQPLFKLLLHCTEKGEDSTSYAISSGFTPVAITSRRKGESTDSQATVMMLEYEPKENLKKGLKV*
Ga0070707_10000007464	F022626	GAG	LKVQKPNWFSAIEVRDLVQRRPWSILSWGAGIIALAFIGYYGILSIGNPPADVGAQFVNAEFPPPSISPWFYGKPITWFIYAAFLYWSAGLEAQRIHFLNFSDRTRRFLFIVTALVAFGAFYEIFYNFMIWSALEVLTQSCSPSPCSPDVISSRWPSLPKPLNLVFVTKVVVLVFSLSVYSLWYLYRVDKEIERRGLTRPVASSRQDLYDSETMRTSPMTRAYSSVATTNIQDPPEAPQPK*
Ga0070707_10000007476	F002498	AGGA	VKASERFHSPSRGIESLSKEEHGLFFDAMHRLGLSNEVKQAAVALYLDFKRRPIGEYNSDHKNLDIFLIASISLAAKVIGDLRTDQEFETRMFVSREKLVDAEERIIKSFGVGDSIIPLPKIVFQLTRRQIEIMAESFSERQLVTSAEKEELVKRSYEYLDEMVARGTAPKMSYRGRAAGVMLNAARDLNLQISEMDLAKAAGFDKKSVAINANFIAALLKDEKNSTEATEILGK*
Ga0070707_10000007495	F028125	AGG	MRSRASLARMPVFLLIGIILSSTPLVSNMPPSFQFSAAASLMNPPTLNTAAINASMRQVLSWAESRVLPNGTATLQGTSNNLWATSLVGRTMTYLQLEIGNTTTQTIIQNMTKAEHILLQNPSFISYGIWSPVNLNSEFQLHLDAQKFLSRSYGLTLDPTARSDMINVTQNMHLNLPSRSDYFDTVAWTLANAVWFAYYSGSTLPPTSDYTAAVQDLNTNYNQTGATSAARDPLIDFDKLLRFLKPITYTDSYFRLQGNSLSQTYQTLETGLAGQLVTRQGSDGNIVSAEPYKSYLVEDFARDLDSSVYLHNNLTYAYSAYRAETYLTNLYLQSNGNFSLPDNGEGLYPTGAYHMISIANDLRSCSSNAWYNILVSSSKLLNYTLTIQNPDGTFRFFLNTTNPGNALTTVNTVSGLVDSYLVIHDTSVLSPETPVNLASCQTISSPSPLQNLSWLYIVIPLALVIAVAVVYERRHRAKYRGLVEK*