Scaffold Ga0070707_100000006

Overview

Basic Information

• Taxon OID: 3300005468
• Scaffold ID: Ga0070707_100000006
• Source Dataset Name: Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 186845
• Total Scaffold Genes: 178
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 131 (73.60%)
• Novel Protein Genes: 13
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (61.54%)
• Associated Families: 13

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan: Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001816	Metagenome / Metatranscriptome	630	N
F002983	Metagenome / Metatranscriptome	515	N
F004426	Metagenome	438	N
F006179	Metagenome / Metatranscriptome	379	Y
F007745	Metagenome	345	Y
F009321	Metagenome	319	Y
F013876	Metagenome	267	Y
F014601	Metagenome / Metatranscriptome	261	Y
F018154	Metagenome	236	N
F025249	Metagenome	202	Y
F028763	Metagenome	190	N
F029394	Metagenome	188	Y
F040558	Metagenome	161	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0070707_10000000612	F014601	GAGG	MSSSKDESRKPSPIPRAVLAGLIAGIAAGLISYIAINSIVGLIIGFIAGAIVGSRTVLMMARAREQDQ*
Ga0070707_10000000613	F028763	AGGAG	VSEPARSKRRIVLEIFAIITGCISLIGLSSTSYYFGLGIFGGAYGAVMIALGVALIAKKEVVV*
Ga0070707_10000000614	F025249	GGAG	MKSLGSRFNNFSAEVRDSSIGSNPRNPPPSVFGIIVVGLLAGLVAGLLAGPNFTLQGFFLGFAGGALVTAGLYFYSAERSPPAK*
Ga0070707_100000006159	F018154	N/A	MVVEAEIAKLRKFQEFLRTEDKLVFQDLVNQCKLYASYASTMVSTIKEVPLLLSMLFGQHKRIVELEKKILMLETLATKDETRGPAQPLPGPSEKLEVTVTQTS*
Ga0070707_100000006160	F007745	GAGG	VSRSEGLEAKDPFLTDYKKNLQDVIRGMKKVGPSGLQLLIQEMIRSRWIRDRRASYAYEVAWVFDRREEAISGIMKKLEEEGNIEPAGLGRGKKGPIKPYKPRTLRLPKQTIKKPSRTPKKDI*
Ga0070707_100000006165	F029394	N/A	LGLLRRVDVLALLGAVVALFLGPASGPWWTVTGAETSKLLSIQVSPFYLQADAAGLSTSTFFSVPLGSFSSILLIISLIALGASSFHPGTGWSKLAVYFSLSSMTELYLSFLLMYHGALTMLLGVYGVLPPYFGTSRILANVVGLDLNNHPNPSVTASFSLPFYLGFLSIGLIATSLIVNDIVGKRKTREKRGVGAIFTTDSE*
Ga0070707_100000006178	F040558	N/A	MKNFFKFSPKNILLATLSAIFPWLPPVLFEKIDFYFHLVHQPDSYYALSGDRLLVDLASFAVWGIVAAYLLRPRWAIIQIALNALLVWVLFYVACPIYGPGGVWQPECYAVGPDGLVGFRLAGIMFCYGALPVLVNVASKGDALDRRIRPALAIVSGTILSVVMIWFPLSAWFSGVTYLPLFLIFQTVLLIGIPQIATGILAARIGRSLRVGAVSGIISLLVVSAVYWTPQCPGCDRTSLLPLAPIWAIFALLGSITELGLSSRLRLPKLSGWLGTVRMEDVRRVGLALVITVCLWTLVAREFWDPSVLYASSMSAGPGELTLGQPFYPYLGGYYNSTQYRICCVEIGVSISMTNPRLLIPDNFLMAGMGVQSPNCCVDGWDFGWRADVFLLPNSSLIVSGSSWETCDGNGNCGGYMWEHLWYHTQTTLNPQNISTPIYLRMQWEPVTVDGQSRSLVNWYYNTTGVAWTKFGSYLPDRRLGTYFDIGLSGGPASELPQGSAFLYQFGVASKLPVQGWSATLFYPSFQYQGSWRAMERANIVQGDFSYWKVNYRWGGRPYPGVTARSNLLDSTIPADIVTFSYTGGTMKDFTPLW*
Ga0070707_10000000619	F004426	N/A	MPALAQRRHSHPTRTVHSVVDDELRVSTHKSIIKTLGRQYTDAAQFFVELVVNSWMWGEATKVEIRIPETSSTIDYEEWGSGMDLAGLREFLTKGKLTDEGFSPKYKRPIRESYGMGSLAWLTVGKDLELQVHKGRFDRTIILTENLIDKHWDATDQSTWRPMRLVQAPLDHDGLRIRIRSLTKKPDPVDVRRALLARANVLALRGYGPFEVFVNGEQVKPEEMRGSTLLPVNIATEYGRITGEIMIMPISKVRAGISEAGISVQQKHITCLQHQFFGLDQYRTHGLSRIQGWVNADFLRRLPGGNDFEHDSAQWRVFEKTMRSFVKSKVYKFLKQTASRRELRSIQYLNREIAERLRRSLRRNVQILSKTIVSLRATPKVNAVPGKTRKEIVLGERKQRRGRKHHREATRSVIHLKDQILAFDVSHGGDRGQAYVETDKTGVRTVYVNMDHPMWYVEAGMTPTKLRYCIRQILERSIAEEILPVSPSTPEETFSTLDTLYNDALA*
Ga0070707_10000000624	F013876	GGAG	MSSIDDPLLKELLAALKEDTQRMAEDLLSIITTNALVAIFALFLAVATFVRLVFYPPRFGPGPGPGLIETTLTFVLFALSVVSIYNLLRLRERYARLQALAEKLGR*
Ga0070707_10000000625	F001816	N/A	MIEVFADKCAKSALLNGPFGGDDRAFDRLLGPAGILTRTSLVTATTDGRVTYYGRTEAGRVYQQVLDTELNFLDPYTGGEVWKK*
Ga0070707_10000000639	F009321	GGA	MMMSREYLFMADKWAEEREKAVLDTVYYCETCNIIIELGDADIAIHKKELPHHKMRRVMILRCGQCGNVVTDSYAEYSAEKNQFWCKNCISEAGAEAFHSS*
Ga0070707_10000000655	F002983	GAG	MTDPNVVIIGSFLLAFKAILVEGSEVAILSLATIKQLGRNNILFGVIAGGLGSILTFLVVWRIFLLLPAIIIDFATAIVLFYFSSRFLRGFIKYAFRHKSFRDKMARMEKEVIEKDLKREGAVDSSQPIRFSVPNSLPVLTITLTEGFEASLVLAAAGAFNIQWTLIGAAVSLLVLVVVSAVSYDYLMRVPRWLLDIIAGVVLLTFGLIFFTSGILSIITGSA*
Ga0070707_10000000681	F006179	GGA	LTIKTDERPVLLSLNGRGFYVLHYSAIPEQDLTRISFDLVDPNTGEGGSAEALVDPKLLEDLNSYNLGISKGQAFLIWIDTSGNEVRWQLRKTVKSDIPRFNAP*