Scaffold Ga0070681_10381339

Overview

Basic Information

• Taxon OID: 3300005458
• Scaffold ID: Ga0070681_10381339
• Source Dataset Name: Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1320
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae → Tripsacinae → Zea → Zea mays (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan, Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027437	Metagenome / Metatranscriptome	194	Y
F039980	Metagenome / Metatranscriptome	162	Y
F096761	Metagenome / Metatranscriptome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070681_103813391	F096761	N/A	ITLICSPYQALVDGMASQLRLQGASVPEVASSLARWNPVLLQHRVSDLEATNAS*
Ga0070681_103813392	F027437	N/A	MTRQISTLEERHSRDQAELVQRCSDFEEKYSQSQTELAQVSAALDDANALSSSLRTQLDSEKVTYGTVPCVIVFLLLA*
Ga0070681_103813393	F039980	GGA	LRYCVPIACLMFEGIDFCLQEEKRILAASRDNLDRLYRDSSNSLTILERSHRFTMEELDNHRCKLQESTDEVIRLKQLISAKDATIKELRASKKSIAQELETAQLAAKVAEETSITLRAQRDRAMDKAIRAGRILMRRPGVVVPEDIRADVNAAPDSSSRPSSSVAPEKDIAK*