Scaffold Ga0066687_10208883

Overview

Basic Information

• Taxon OID: 3300005454
• Scaffold ID: Ga0066687_10208883
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_136
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1070
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California: Angelo Coastal Reserve
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F043662	Metagenome / Metatranscriptome	156	Y
F045954	Metagenome / Metatranscriptome	152	Y
F066055	Metagenome / Metatranscriptome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066687_102088831	F045954	N/A	LRKVRSGDYRVNFRDGNETTRYYTDSLEDAVKTAVEMTRKRAL*
Ga0066687_102088832	F066055	GGAG	MPPTLEARTADRAIASLRKAIEELAAERPRDARAMVVNASGSVAALREMIEGQILKQPEIMK*
Ga0066687_102088833	F043662	GAGG	LFALMTVASFTNVKVSICDDSATLYCLSWEYDCARNHVWIDRHSYTIEADPTFKRRPTLYVNPPQNVRVGMDGYFPTRKLDARKHGIVDTVLAHAKRAGLFEAAIAKLRARERD*