NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066687_10208883

Scaffold Ga0066687_10208883


Overview

Basic Information
Taxon OID3300005454 Open in IMG/M
Scaffold IDGa0066687_10208883 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_136
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1070
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F043662Metagenome / Metatranscriptome156Y
F045954Metagenome / Metatranscriptome152Y
F066055Metagenome / Metatranscriptome127Y

Sequences

Protein IDFamilyRBSSequence
Ga0066687_102088831F045954N/ALRKVRSGDYRVNFRDGNETTRYYTDSLEDAVKTAVEMTRKRAL*
Ga0066687_102088832F066055GGAGMPPTLEARTADRAIASLRKAIEELAAERPRDARAMVVNASGSVAALREMIEGQILKQPEIMK*
Ga0066687_102088833F043662GAGGLFALMTVASFTNVKVSICDDSATLYCLSWEYDCARNHVWIDRHSYTIEADPTFKRRPTLYVNPPQNVRVGMDGYFPTRKLDARKHGIVDTVLAHAKRAGLFEAAIAKLRARERD*

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