Scaffold Ga0068706_1000492

Overview

Basic Information

• Taxon OID: 3300005452
• Scaffold ID: Ga0068706_1000492
• Source Dataset Name: Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS-B MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 19218
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (72.41%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 9 (81.82%)
• Associated Families: 11

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Source Dataset Sampling Location

• Location Name: USA: Wyoming: Yellowstone National Park
• Coordinates
  • Lat. (^o): 44.963
  • Long. (^o): -110.715

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008994	Metagenome / Metatranscriptome	324	N
F036129	Metagenome / Metatranscriptome	170	N
F039500	Metagenome / Metatranscriptome	163	N
F040512	Metagenome / Metatranscriptome	161	N
F044245	Metagenome / Metatranscriptome	154	N
F044342	Metagenome / Metatranscriptome	154	N
F049463	Metagenome / Metatranscriptome	146	N
F054491	Metagenome / Metatranscriptome	139	N
F057955	Metagenome / Metatranscriptome	135	N
F070747	Metagenome / Metatranscriptome	122	Y
F104638	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0068706_100049213	F044245	AGGAG	MIDTMLSIPFRYPLLKKMNRTDAMVMSAILFAFRLHQQTGRYFYLSDAKIMDWTGFKRTAIYEARKRLEAEGWLVVKRGHGGHNMYMITDAVIARLEEADGQSREQQQDKLRKAAEKAISNLNVEQAIANIILTFILRTGRMPTKKALRRWIVAARKIKEHGHSADTIADFVRKEDRSLFALLKRIEKGLVKKKTRIEYEFINDPERGWIAIPHEVEVVEDALEVINERF*
Ga0068706_100049216	F104638	N/A	MNDKKDMILAALLTLDQLAVQFAVLDEIYPDFRALSKAFISYRDDLMRRADVSENDFEAYKRMVLNEIGDAVE*
Ga0068706_100049217	F039500	AGGAG	MEIIESVQTGIERIDETVRDLAELAVAIQRTERMERNAVTLRLLLIARAIEVHKYDVTFKLLTETLSYSDFYAVQLMKLAQEVGEQALMNAVTSGKPLTLAQWQALAEVGQESRNEVIDHVIEDDLPPVEITARATGLDTEEVIITKLLKRLNHLLVQIEKMNARERAVDVLAEHGYVTKIIRNR*
Ga0068706_10004922	F036129	GAG	MTRIKLDSVIEALSNQARREQDLSLIERDDAYLNHVINWIMLSGAVQSVQLLKQKRAVLKLDEAVVKELGFDVNS*
Ga0068706_100049221	F054491	GGAG	MSELKPGVTYKWVAERSEWCTGCGCNNYATGQCIRLDNSRIVLGLKERIEVVGGTPHRFSTAMLSYCKSEQAAQEAIQKGLARPVTQADFRRLLMLAY*
Ga0068706_100049223	F070747	GAG	MTKQEDNVSELDLLRAQTTLLNARVTLFDQKRKEALEKLVNQFCDFYCIPKSRRFDVMRTEEEYRGAICAVLFAVNELNKRGIAVKRVYWDRYGGLLIKLADPKLNEVKIDEEIKQLAKKRRKQNQGWFIV*
Ga0068706_10004924	F008994	GAGG	MRVTRFAVDDNGRALFPDYFIVDDNEGIALGMYSANINVQSIIDEGLALTPWLSTQWPGRAVSFNTWREAFARNGHAFPKYHAQIAKNVRLSELVDINRAFVELFMNGMDLTDPLNAETHRQLLTERNIDFFEFMNQK*
Ga0068706_10004925	F057955	N/A	MIDLIEFFSTYGVLGVVALISMSLSLWLLRENQKTLDQCNARVDRLIETHIGFVKNVTEKMDELLRDISRLIDKAERTIEELEKAKGGRKDV*
Ga0068706_10004926	F040512	GGAG	MFDLLANATVAGLSVISARALEQYNWFQRLEPETKRLIAVAIAAFIALAIHMIGAIYQNAEPQSVKAAFSTALAIVIQQTYHALTKQDAQ*
Ga0068706_10004928	F049463	GGAG	MKKDFGNEYQKSSKTLTQPQMQELLADMLKVPVYILGKTPNLDDLNAFLAQFGYQTNLALLRPVKVWANLEEDIINEADKVIAQFIKSDLESPVIVVILPPLVALAAALVVRMKEKCPTLKVLVVHYRVEHEPHFLGFELFCT*
Ga0068706_10004929	F044342	AGGAG	MNDPVIPVTMHLPKSVVERFKRKAVELIPEEREEAPSLLLTLFINYMSSDDYWCLFLPDLTREDYKKWQEMANQVYDSIYETVKYHGAGMFPGEIADLAQAVVAARRMTPDDLIKLIIISARYNQVMWKRNDLNKDSPAPSQ*