Scaffold Ga0070708_100004349

Overview

Basic Information

• Taxon OID: 3300005445
• Scaffold ID: Ga0070708_100004349
• Source Dataset Name: Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11126
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan: Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012005	Metagenome / Metatranscriptome	284	N
F019369	Metagenome / Metatranscriptome	230	N
F085526	Metagenome / Metatranscriptome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0070708_1000043494	F085526	GGA	MVDFHYFIFIINADAAVFGVIVFLMSYIALRLVYRMWRRSIRCPHCGEVYATKHIAHTPEKTLPNTLWT*
Ga0070708_1000043495	F019369	AGG	MSTVEIENYRWKCENFLKGYCPGKDCDICAKMTNRLLLKGLIKITHADEILQPQQAATPSS*
Ga0070708_1000043499	F012005	GAG	MKFALVAGGALLLILGLLAYSMIPNFHSVPQESAQTVVNLKSIPVSSASLSETPQNVTLFAGKENHLLVNMTVSTQTGAPSSIQFKLFAEGSFQSCMFSAEQRGCLVNQAVSNSTIRVPLNASTTYFFGFDNRGSSSSKQVLLSATLVGSSVTTLVTRDGGLNFGGLGMSLIGLLVTLYGVFAKTAIRWE*