Scaffold Ga0070694_100015147

Overview

Basic Information

• Taxon OID: 3300005444
• Scaffold ID: Ga0070694_100015147
• Source Dataset Name: Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4835
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (81.82%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan: Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020982	Metagenome / Metatranscriptome	221	N
F041239	Metagenome / Metatranscriptome	160	N
F064925	Metagenome / Metatranscriptome	128	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070694_10001514710	F064925	GGAG	MLGEELARCHVGAMLRDQPGRYYCAGCLASLAETVAWTKRDARRAIAVLFRWPIGLTITMRRRRPCRGCGQVGGARLGATRLAGGSVAV*
Ga0070694_1000151477	F041239	GGCGG	MREAGLGLTVWWDERDYRACGASLECRGRFIVGKLFDLDTRMLQAAWLAAFGRRLLGPPEIQAHDITRSQWGLILSHMGASPDEVADVQARMGRT*
Ga0070694_1000151478	F020982	GGAGG	VMPRRHFMGDRTYRGVTYTLQLEAVEDCVFKAHARLLPSGPEVSFVDEASDRALQQAEAEIKQIIERREASAVVRERLPERKYGDVTYTIIVRTEATRVVTELYFIRANAVQRRPGPGTFFGLFPGKTKDRAIAQAEKSFKAKIDKERAEGRGRKA*