Scaffold Ga0070700_100000109

Overview

Basic Information

• Taxon OID: 3300005441
• Scaffold ID: Ga0070700_100000109
• Source Dataset Name: Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 52612
• Total Scaffold Genes: 51
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 39 (76.47%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan: Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001505	Metagenome	681	Y
F033848	Metagenome	176	Y
F041423	Metagenome / Metatranscriptome	160	Y
F053644	Metagenome	141	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070700_10000010912	F033848	AGGAG	METFYAMRRANGDWFAVADKDNLRVPIFKSSGDAMIARSRDSGMECFRPVMFNARLLEELRRTDGDSATFLMIADPSRHLKHGLRLSFTELAPLMIDLTKRDIRI*
Ga0070700_10000010914	F053644	GAG	MKGLRVYLDPKRSDPRGGGLIFYSQRAGGPCYRWRFEELRGKWLCSRMHAGDLILTELISAPWKDIPAALRTTLDQHYVE*
Ga0070700_10000010916	F041423	GGA	VDLKDHMVNFRICDIFYPDCQQILFQLHGNDVLQGRVVDLSESGLVEGSFVEIDVEDLAEKVIVPLERILGISE*
Ga0070700_1000001096	F001505	N/A	MQNTKGESNSPAQAEFDPIRWAQLNPWLSGGQADDRTPMNGSVKASGGTPSVQRSFARRSHQAMFKKWSQARHD*