Scaffold Ga0070711_100004024

Overview

Basic Information

• Taxon OID: 3300005439
• Scaffold ID: Ga0070711_100004024
• Source Dataset Name: Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8648
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan: Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.4774
  • Long. (^o): -85.451

Associated Families

Family	Category	Number of Sequences	3D Structure?
F059390	Metagenome / Metatranscriptome	134	Y
F071508	Metagenome	122	Y
F092511	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070711_1000040242	F092511	AGGAG	MTDVSQYSDDQTAQITTLQQQQALFTQALAAAVSGKWVGAGSVEAFLYALDPSLQGSVTSDPPVTQSEYAEDDDPKV*
Ga0070711_1000040243	F071508	AGGA	VSWDPNWFMPAQAYSWTCSVCSTTWVLQATATAYQDADIYDARYAVGERMGYPSCVNQTYGCMSSQCVIDTLASYGLVAREVHCTFDQAYAIARTNTGTINPQGMYHFMALRGTSGPDILVANSARAYMGVYDTLSRDQFNALGPVSIIYVESRA*
Ga0070711_1000040245	F059390	AGGAG	MQVTTVGNLAITLGWLVAVLVLLIAILGLLSVVPYTAPVVFGLIAALAVARLI*