NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0070713_100036017

Scaffold Ga0070713_100036017


Overview

Basic Information
Taxon OID3300005436 Open in IMG/M
Scaffold IDGa0070713_100036017 Open in IMG/M
Source Dataset NameCorn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3990
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (91.67%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Angelobacter → unclassified Candidatus Angelobacter → Candidatus Angelobacter sp. Gp1-AA117(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan: Kellogg Biological Station
CoordinatesLat. (o)42.4774Long. (o)-85.451Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011259Metagenome / Metatranscriptome293Y
F023966Metagenome / Metatranscriptome208Y
F037883Metagenome / Metatranscriptome167Y
F042033Metagenome / Metatranscriptome159Y
F044745Metagenome / Metatranscriptome154Y
F070583Metagenome / Metatranscriptome123Y

Sequences

Protein IDFamilyRBSSequence
Ga0070713_10003601710F044745GGAMKGENTMNDQNRVLARKGARDLNEHEVAIVAGGLRTLTACTLAAAGTLDGDTFHSECGSPDQ*
Ga0070713_10003601712F023966AGGAGGMDKDNRVLGRMGARELTEQEVDAVNGALKVAHTLTPCFIDKKQQLLNGDQSIGECGP*
Ga0070713_1000360172F037883AGGAGMSNQNETNRVLLRVGARMLTEEEVESVSAAGPPCELTFTHLPKGGSDEDTFCP*
Ga0070713_1000360173F011259AGGAGMSRQDNRVLARTGARELTIEEVDQVSAAMAAHTNVCTAIMATGTATGSGDGDGCSDTDKDAHFI*
Ga0070713_1000360174F070583AGGAGMNDQSRVLIRRGARELDREETKKVSGGLNTQTACTWDPDLGGRDGDGPPEC*
Ga0070713_1000360176F042033AGGAMNDQNRVLIRRGARSLNEEEIQRVGGGLNTETLCTVPSATCPNNDGDASIGECGPRC*
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