Scaffold Ga0070714_100291999

Overview

Basic Information

• Taxon OID: 3300005435
• Scaffold ID: Ga0070714_100291999
• Source Dataset Name: Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1517
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan: Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.4774
  • Long. (^o): -85.451

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000252	Metagenome / Metatranscriptome	1455	Y
F019919	Metagenome	227	Y
F092814	Metagenome / Metatranscriptome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070714_1002919992	F092814	GGGGG	MRQIISSVYGALLISIWICVMGIVVAVLDSGEPKWLLVAAGFVAATITVTLVQELIEWRSRPTKSALERRSI*
Ga0070714_1002919993	F019919	GGAG	MSRMLFITLTLICWASPIKAEVLTLSCSGTMKAEEEQAKSYAITKMGLIVNVDAGVVTGFTEIPARIDDINANSVVFNGTTIHPSGAEWSVHGAMDRITGSLGATVIWFNRRTNDLLMRMNYELICTPTK*
Ga0070714_1002919994	F000252	GGAG	MAREELKWQNIDADDLPAEVKKSFDAMVEAEAAFKADLEKLLKNEGHMPEDKFLVMSRKGKRLGVAFASTPRGEGGAGSLKFKTK*