Scaffold Ga0066859_10021571

Overview

Basic Information

• Taxon OID: 3300005425
• Scaffold ID: Ga0066859_10021571
• Source Dataset Name: Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV199
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1977
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location

• Location Name: Pacific Ocean: Eastern Tropical North Pacific
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028834	Metagenome	190	Y
F085555	Metagenome	111	N
F092206	Metagenome / Metatranscriptome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0066859_100215711	F028834	N/A	KHMIKIDIRAKNVAYITIGKWVIYVDDSTGERIIDSWEE*
Ga0066859_100215713	F092206	AGGAG	MNEWIGDLQAKGYDWQRDRKLFRVCGQVVALTMEVRAGMLMTSRRKAPSPYRWLKKSLNCSGSREKVLKRANDWIGKYFKAGPMPKYLADQLNKGNIEITIPGKLIQKGESNGS*
Ga0066859_100215715	F085555	N/A	MKIKRIGGNMEKYTETDVIKRFEKVVKDRMTVRVFNAMPRTYRDVFLLSEVREEMTRYIVKLLNCDKNVNNRIQYLADDIDKQREARDREIEQFRAKEFKE*