Scaffold Ga0074248_1110499

Overview

Basic Information

• Taxon OID: 3300005407
• Scaffold ID: Ga0074248_1110499
• Source Dataset Name: Mixed alcohol bioreactor microbial communities from Texas A and M University - 55C, Day 16
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 534
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Biotransformation → Mixed Alcohol Bioreactor → Unclassified → Unclassified → Mixed Alcohol Bioreactor → Mixed Alcohol Bioreactor Microbial Communities From Texas A&M University

Source Dataset Sampling Location

• Location Name: Texas A and M University College Station, Texas, USA
• Coordinates
  • Lat. (^o): 30.620833
  • Long. (^o): -96.341111

Associated Families

Family	Category	Number of Sequences	3D Structure?
F087072	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0074248_11104991	F087072	GGAGG	MKATVFTKRMFSLELSEEELGIIAGALYCVDGSDIKYFVDEYKYPCNGYNFDEINDIKHNLSEQINKLVEGKN*