Scaffold Ga0070703_10000021

Overview

Basic Information

• Taxon OID: 3300005406
• Scaffold ID: Ga0070703_10000021
• Source Dataset Name: Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 75160
• Total Scaffold Genes: 76
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 59 (77.63%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (100.00%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan: Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020901	Metagenome / Metatranscriptome	221	Y
F043033	Metagenome / Metatranscriptome	157	Y
F057238	Metagenome / Metatranscriptome	136	N
F067718	Metagenome / Metatranscriptome	125	Y
F073522	Metagenome / Metatranscriptome	120	N
F077590	Metagenome / Metatranscriptome	117	N
F101117	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0070703_1000002123	F077590	AGGAGG	MASRPKHVRGTLIAVFFAVVVLPFVLWLGALFGPAIWVSAAVTTGAVGALVWRRRRVETARERAYEGSSFGSVVIRMRAREAAYALVIEKRRFELLGAR*
Ga0070703_100000213	F067718	AGG	MEEIHVCDPPMEQRPASAPTEWQCPECSTWWDLQPSVPPEVAPTYDFLTHQGIVPAKWVRRES*
Ga0070703_1000002139	F057238	GGAGG	VEQTVSPTPNEGITMTTYERWRDVAGYRPGRHDNSGLRARLSGTKIEDRPIVSELRLAMEEREALTLPRKASTRR*
Ga0070703_1000002140	F101117	GGA	MSMFNTNEPRTPGGRMGDDMEKMFLDEAKKDHLANEAKRADAEEDRERAELGESVTPKRPWWKFWA*
Ga0070703_1000002147	F043033	AGG	VVVPLQAAADRASIYDLLPFITIAALGAGFLVVFRQRAAARRMARQQRPMHAAITGSRGRETSLPGRPWWGNPWLWAAVCAVSLVLGFFVWPGLFGGAFIVLPFVWIRRPRREPRMDPRTNGHTSRDAGTFTGE*
Ga0070703_1000002164	F073522	GGCGG	MDAYVYIRIASGSMADVLAVLAAKPGIKRVVPTVGEWDLVLYARGATLDEIGNNVLAEVHQIPGVVQTITAPVVPPDRAGLFGIAVAPPQILPNACYVHIKAAAGKAVDIGEALAGMEEIDGVALLAGRWDILACIAQPWETASGIILEQVHAIPGVLSTSTLVSIAFDEGEEDRDQFSAWS*
Ga0070703_1000002167	F020901	GGCGG	VCRAVKVLCVATDQDALLRLRRASVGAGWELVAGATDVRGALDQLDVERPHAVVVFGPFAELVALAAERFPGMRIITDRETPGASVVAASIEDVRELLAEQPRPGGPVR*