Scaffold Ga0066867_10048086

Overview

Basic Information

• Taxon OID: 3300005400
• Scaffold ID: Ga0066867_10048086
• Source Dataset Name: Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014F12-01SV261
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1671
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location

• Location Name: Pacific Ocean: Eastern Tropical North Pacific
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013467	Metagenome	271	Y
F036024	Metagenome / Metatranscriptome	171	Y
F066274	Metagenome / Metatranscriptome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066867_100480864	F013467	N/A	MTFGNLRNWVWCEDCLEWKDADEVNFVSIEEDSFGKDMLTFACDKCGNDNKNNIIQSSTRPRG*
Ga0066867_100480865	F066274	GAGG	MMIELASDEIGWVKYALTRAASTMEGRDPDMTLKEEKLLMRLVRKIEKQEEEYLK*
Ga0066867_100480866	F036024	AGAAG	MGMSIEYRMGRIGDEDTFLKLDEAQKICQAKFAEYISEIKYEDGEEAIDDYAWHIVTPERFEKDWENDERLKKTDEIKAKYKNLVKNNRVVFFEIDWN*