Scaffold Ga0074224_1054

Overview

Basic Information

• Taxon OID: 3300005384
• Scaffold ID: Ga0074224_1054
• Source Dataset Name: Marine bacterioplankton communities from Palmer Station B, Arthur Harbor, Antarctica - Winter
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 39915
• Total Scaffold Genes: 57
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (24.56%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → Candidatus Nitrosopumilus sediminis (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Bacterioplankton Communities From Palmer Station B, Arthur Harbor, Antarctica

Source Dataset Sampling Location

• Location Name: Arthur Harbor, Palmer Station, Antarctic Peninsula
• Coordinates
  • Lat. (^o): -64.766667
  • Long. (^o): -64.05
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F078308	Metagenome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0074224_105414	F078308	N/A	MEIIVPNKIPKNIFVLIIAKMSNPFEIFFANICVTLRTIPTNIIKISIENIPVDDVMIKNQKDNPAVTARDLNLGELACILNRIDKCH*