3300005384: Marine bacterioplankton communities from Palmer Station B, Arthur Harbor, Antarctica - Winter

Overview

Basic Information

• IMG/M Taxon OID: 3300005384
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0056601 | Gp0051057 | Ga0074224
• Sample Name: Marine bacterioplankton communities from Palmer Station B, Arthur Harbor, Antarctica - Winter
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 3492552
• Sequencing Scaffolds: 1
• Novel Protein Genes: 1
• Associated Families: 1

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → Candidatus Nitrosopumilus sediminis	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Bacterioplankton Communities From Palmer Station B, Arthur Harbor, Antarctica
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Bacterioplankton Communities From Palmer Station B, Arthur Harbor, Antarctica

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → planktonic material
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Arthur Harbor, Palmer Station, Antarctic Peninsula
• Coordinates
  • Lat. (^o): -64.766667
  • Long. (^o): -64.05
  • Alt. (m): N/A
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F078308	Metagenome	116	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0074224_1054	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → Candidatus Nitrosopumilus sediminis	39915

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0074224_1054	Ga0074224_105414	F078308	MEIIVPNKIPKNIFVLIIAKMSNPFEIFFANICVTLRTIPTNIIKISIENIPVDDVMIKNQKDNPAVTARDLNLGELACILNRIDKCH*