Scaffold Ga0074273_109730

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0074273_109730

Scaffold Ga0074273_109730

Overview

Basic Information
Taxon OID	3300005378 Open in IMG/M
Scaffold ID	Ga0074273_109730 Open in IMG/M
Source Dataset Name	Marine microbial communities from Deepwater Horizon subsurface plume in Gulf of Mexico, 52-4 In plume
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	747
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Black Smokers → Subsurface Plume → Marine Microbial Communities From Deepwater Horizon Subsurface Plume In Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Gulf of Mexico
Coordinates	Lat. (^o)	28.716667	Long. (^o)	-88.466667	Alt. (m)		Depth (m)	1210
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F030135	Metagenome / Metatranscriptome	186	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0074273_1097301	F030135	N/A	LGFLRGPKNREELATLSSFTNIWHSTFAGCQFPDAILPGKEAIDLVAGPLN*

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