3300005378: Marine microbial communities from Deepwater Horizon subsurface plume in Gulf of Mexico, 52-4 In plume

Overview

Basic Information

• IMG/M Taxon OID: 3300005378
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0047147 | Gp0052348 | Ga0074273
• Sample Name: Marine microbial communities from Deepwater Horizon subsurface plume in Gulf of Mexico, 52-4 In plume
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 52555614
• Sequencing Scaffolds: 3
• Novel Protein Genes: 6
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	3

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Microbial Communities From Deepwater Horizon Subsurface Plume In Gulf Of Mexico
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Hydrothermal Vents → Black Smokers → Subsurface Plume → Marine Microbial Communities From Deepwater Horizon Subsurface Plume In Gulf Of Mexico

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine black smoker biome → black smoker → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Subsurface (non-saline)

Location Information

• Location: Gulf of Mexico
• Coordinates
  • Lat. (^o): 28.716667
  • Long. (^o): -88.466667
  • Alt. (m): N/A
  • Depth (m): 1210

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002457	Metagenome / Metatranscriptome	557	Y
F002556	Metagenome / Metatranscriptome	548	Y
F030135	Metagenome / Metatranscriptome	186	Y
F098669	Metagenome / Metatranscriptome	103	N
F103410	Metagenome / Metatranscriptome	101	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0074273_109730	Not Available	747
Ga0074273_112137	Not Available	504
Ga0074273_140186	Not Available	530

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0074273_109507	Ga0074273_1095071	F103410	RLTAWTVPQIAADPKERSNLLSSPTNPDEPTGNPFDALISMPAQHILGRTPEGTSRTVLTDQIGLPKVSRSPQRRTFLHHPEASLEHASFRLLYHKTAQKLFSDTADHFCQHLRRHARVPDPGPAHRHSDDPKITFLPISLAFDRLAQGPHDPGHTTPEGFACRFGCSTAPLLPGGIATTVSQPSQSTQRPLGHLTLCRTIRPEGHIEGLGSRNTIHSKHSKVTRSGTFQPFP
Ga0074273_109730	Ga0074273_1097301	F030135	LGFLRGPKNREELATLSSFTNIWHSTFAGCQFPDAILPGKEAIDLVAGPLN*
Ga0074273_112137	Ga0074273_1121371	F098669	METATRSRKQKWRLKEAEGLGRKRRVEEAERRELHESDQGLDPGHGLNPGRKVRRIDQAMEGSPEIVPAKIRKKPCL
Ga0074273_128297	Ga0074273_1282971	F002457	FDFLCEKVAAMPRRFGLAPSWEAEYGGSIEKRTAARKAMFDAVDAKQGPARGWIGAAQFTDWATTHIGGKIAAIDNVKEVDFYHVSNYDEAAFLKAIEIAVTNKNSKEYASLYEFLLTAFVEVDATCRGEITFSEFNALVERAAAVPRTFGLAPPDGTAEERKAIFSAMDDTKTVLITVRKFLEWVVSHTAGKVEAQKAGKGYKK*
Ga0074273_140186	Ga0074273_1401861	F002556	IGLEQFVTWATDHLITKVATIDIKSEVDFYHVEQYGEHQTLVFLEQAVTDPNSRAHASLYEFLLAIFTEVDSRSTGVLTFAEFDTLLSRAAEVPRTFGLAPPDASKEIRKQFFDSMNDAQMGGVTFRTLLAWTVEHTKGKIEAQKAGKGYKK*
Ga0074273_144301	Ga0074273_1443011	F103410	VVKRCRPKGLQSLIASLPGPSHKSPQTRRSAATCFLAQPIPTNPRASPFDALISMPAQHVLGRTPEGTSRTVLTDQIGLPKVSRSPQRRTFLHHPEASLEHASFRLLYHKTAQKLFSNTADHFCQHLRRHARVPDPGPAHRHSDDPKITFLPISLAFDRLAQGPHDPGHTTPEGFACRFGCSTAPLLPGGIATTVSQPSQSTQRPLGHLTLCRTIRPEGHIEG