Scaffold Ga0074216_1121

Overview

Basic Information

• Taxon OID: 3300005369
• Scaffold ID: Ga0074216_1121
• Source Dataset Name: Human periodontal pocket microbial communities from Stanford, California, USA - TM7c
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4070
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonas → Candidatus Saccharimonas aalborgensis (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Oral Cavity → Periodontal Pockets → Human Oral → Human Periodontal Pocket Microbial Communities From Stanford, California, Usa

Source Dataset Sampling Location

• Location Name: Stanford, California, USA
• Coordinates
  • Lat. (^o): 37.429308
  • Long. (^o): -122.169514
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F095633	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0074216_11212	F095633	AGGAG	MRNCENFTEVGRGEGLTEGELRTMGTLAMKATEELKKTTIRKEAVLLGDVPFDSWDEFAKAVQEMAGYSYEPIPVKINTKRLIATAFLDDRGEMSVEENSVPEEVFINLSRTRCVVDADRSHKSYKFTCPALKKYPSGELYPIREVYVISAIDANGSQEVDFKIIQGGLN*