3300005369: Human periodontal pocket microbial communities from Stanford, California, USA - TM7c

Overview

Basic Information

• IMG/M Taxon OID: 3300005369
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0055743 | Gp0050999 | Ga0074216
• Sample Name: Human periodontal pocket microbial communities from Stanford, California, USA - TM7c
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 474179
• Sequencing Scaffolds: 1
• Novel Protein Genes: 1
• Associated Families: 1

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonas → Candidatus Saccharimonas aalborgensis	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Periodontal Pocket Microbial Communities From Stanford, California, Usa
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Periodontal Pockets → Human Oral → Human Periodontal Pocket Microbial Communities From Stanford, California, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: Stanford, California, USA
• Coordinates
  • Lat. (^o): 37.429308
  • Long. (^o): -122.169514
  • Alt. (m): N/A
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F095633	Metagenome	105	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0074216_1121	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonas → Candidatus Saccharimonas aalborgensis	4070

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0074216_1121	Ga0074216_11212	F095633	MRNCENFTEVGRGEGLTEGELRTMGTLAMKATEELKKTTIRKEAVLLGDVPFDSWDEFAKAVQEMAGYSYEPIPVKINTKRLIATAFLDDRGEMSVEENSVPEEVFINLSRTRCVVDADRSHKSYKFTCPALKKYPSGELYPIREVYVISAIDANGSQEVDFKIIQGGLN*