Scaffold Ga0070675_100000030

Overview

Basic Information

• Taxon OID: 3300005354
• Scaffold ID: Ga0070675_100000030
• Source Dataset Name: Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 100523
• Total Scaffold Genes: 88
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 51 (57.95%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan, Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001519	Metagenome / Metatranscriptome	679	Y
F068101	Metagenome / Metatranscriptome	125	Y
F068102	Metagenome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070675_10000003023	F068101	AGGAG	MARGFPEDHERAAAGLDFEDDPVRNGAASLGAKMAEGPEAFMDEIESLLPESWREHIQQFPIAAVALGLGIGVWLGLKKSDEVIAAGTALISSAAMSNVSQVMDKMKGDA*
Ga0070675_10000003041	F068102	GGA	MRSRPSQLLFVLAALLFACGRPQPLTAEKAQAIINESSYKREPIYAEVPQKVWWSPRAPKDDYDEKALRTLRNLERAGLVTITATESPDSATYIAKVTKKGFPILGTAPSYRGPVYRAQIAEKHYDGIRNFVRHPTQPTVGHAELIWHYDNPTPYYTMFETKIDKPLQKPFASHVSFWYGKHEWRFEVNIKKTQPAA*
Ga0070675_10000003082	F001519	N/A	MTLVNSLCAEISVFQGVGETTGLVVERAAIRGKRGLCKSMRDLAIKSRVLGDGYYYIPIDLWPKGKEPVVVHKHDWTVISSIPRTSRATKKRAGK*