NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0070668_102129963

Scaffold Ga0070668_102129963


Overview

Basic Information
Taxon OID3300005347 Open in IMG/M
Scaffold IDGa0070668_102129963 Open in IMG/M
Source Dataset NameSwitchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)518
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan, Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017741Metagenome / Metatranscriptome239Y
F023151Metagenome / Metatranscriptome211Y

Sequences

Protein IDFamilyRBSSequence
Ga0070668_1021299631F017741N/AMPRINQQALKTELAKRGFESILIKRELPDGRVEVEANKLHPVHVEKGEAIYAPVPVSLSIKLDARGQVKSIEGDTPKPAAVADAARYMKTLRDSGQLAAAGEAA
Ga0070668_1021299632F023151N/APRAGKGTAETLRAAAPQTHETHTHELRREGKHMVLRRVRIDCGFAHH*

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