Scaffold Ga0074242_10444612

Overview

Basic Information

• Taxon OID: 3300005346
• Scaffold ID: Ga0074242_10444612
• Source Dataset Name: Saline sediment microbial community from Etoliko Lagoon, Greece
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 25329
• Total Scaffold Genes: 56
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 44 (78.57%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Sediment → Saline Water And Sediment → Saline Water And Sediment Microbial Community From Etoliko Lagoon, Greece

Source Dataset Sampling Location

• Location Name: Etoliko Lagoon, Greece
• Coordinates
  • Lat. (^o): 38.482158
  • Long. (^o): 21.313175

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029369	Metagenome / Metatranscriptome	188	Y
F092915	Metagenome / Metatranscriptome	107	Y
F098263	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0074242_1044461212	F092915	GGAGG	MDDNKKVQQLTLILMALLFVLLALGIAGNGDIEVEEDSAELYIEMVCKGHWPDYENRNPSCG*
Ga0074242_1044461216	F098263	AGGAG	VIAIMICDDCDEQMQEVFTASENFKTQGLECVSPVYTSSPAIGRERGYTKNDFEEKDKNDSRAC*
Ga0074242_1044461225	F029369	AGGAG	MIEQSKRKAVFSELKGYCCHAGDNDFMEVTKWSNGEGYDICIDRKNGHEKFSLTFGEFDLLTVLMNWKGE*