Scaffold Ga0070692_10005237

Overview

Basic Information

• Taxon OID: 3300005345
• Scaffold ID: Ga0070692_10005237
• Source Dataset Name: Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5502
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan: Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001505	Metagenome	681	Y
F021790	Metagenome / Metatranscriptome	217	Y
F053644	Metagenome	141	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070692_1000523710	F021790	GAGG	MSSLILATQLFGLLELDPRGTVIFSKLEGDEKSAGAADVVGRNFFSDVATFLNVAEFRQRFETFDSNSEPSSSFIFNCDYGDGAVPVKVLLARLREDTKYPESVLVYIKKADQCS*
Ga0070692_100052373	F001505	N/A	MNDIYFIQKTENAANLPAQSEFDPVRWAQLNPWLSEGQADDRTPMNGSVKDSGGPPSVQRSFARRSHQVMFKTWSQARHD*
Ga0070692_100052378	F053644	GAG	MQGLKVYLDLKRTDPQVGGLIFYSQRAGGPYYRWRYEELRGEWLCSRMHAGDLIVRELVSAPWKEIPAALKTTLDLHYVE*