Scaffold Ga0070661_100000004

Overview

Basic Information

• Taxon OID: 3300005344
• Scaffold ID: Ga0070661_100000004
• Source Dataset Name: Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 243876
• Total Scaffold Genes: 258
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 184 (71.32%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan, Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016854	Metagenome / Metatranscriptome	244	Y
F031439	Metagenome / Metatranscriptome	182	Y
F081191	Metagenome / Metatranscriptome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070661_10000000454	F031439	AGG	MYLIPLVLIVLLALIAVAWSPIFALIFFVIAFVGFLGYVGLSRRADEKLAPPEQPGRQPQHEAHGGDTGMWGERKA*
Ga0070661_10000000480	F016854	AGG	MARSDVKSLPKPDEVWLSCPPYLLMARIVEVDLVSEPPVVSYELHDDDGSLLHEVEHATLDHGWWQTFQRLEPRFG*
Ga0070661_10000000482	F081191	N/A	MSPPRRLPSPEVLVAAIVELADDGFCRRSELALKFPGLGARDLRRALRRAIAQGFVIERRGPDGLFHLAVSSEGWDLHRSG*