NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0074234_1791

Scaffold Ga0074234_1791


Overview

Basic Information
Taxon OID3300005342 Open in IMG/M
Scaffold IDGa0074234_1791 Open in IMG/M
Source Dataset NameHot spring viral communities from Yellowstone National Park, Wyoming, USA - Nymph Lake
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4626
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Hot Spring → Hot Spring Viral Communities From Yellowstone National Park, Wyoming, Usa

Source Dataset Sampling Location
Location NameNymph Lake, Yellowstone National Park, Wyoming, USA
CoordinatesLat. (o)44.7523206Long. (o)-110.7253926Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F063846Metagenome129N

Sequences

Protein IDFamilyRBSSequence
Ga0074234_17915F063846N/AMRINTDALLGLGAVAVLTAILLFIAWYHTYPQLTCAYVTTHYANHVLTVLVNFTCNGNLYAVWDVNAGNCIYNYNASQQLPTVTNSLISWSNYVAWNFTFTCTKPPGNVTVDLTTPAGAGYAQCHYLLTIPTNTTAAVKC*

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