3300005342: Hot spring viral communities from Yellowstone National Park, Wyoming, USA - Nymph Lake

Overview

Basic Information

• IMG/M Taxon OID: 3300005342
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0045297 | Gp0051221 | Ga0074234
• Sample Name: Hot spring viral communities from Yellowstone National Park, Wyoming, USA - Nymph Lake
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 878426
• Sequencing Scaffolds: 5
• Novel Protein Genes: 7
• Associated Families: 7

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Predicted Viral	2
Not Available	3

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Hot Spring Viral Communities From Yellowstone National Park, Wyoming, Usa
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Hot Spring → Hot Spring Viral Communities From Yellowstone National Park, Wyoming, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): aquatic biome → hot spring → spring water
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: Nymph Lake, Yellowstone National Park, Wyoming, USA
• Coordinates
  • Lat. (^o): 44.7523206
  • Long. (^o): -110.7253926
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F063846	Metagenome	129	N
F063848	Metagenome / Metatranscriptome	129	N
F075084	Metagenome / Metatranscriptome	119	N
F076264	Metagenome / Metatranscriptome	118	Y
F080245	Metagenome	115	N
F087442	Metagenome / Metatranscriptome	110	N
F087445	Metagenome / Metatranscriptome	110	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0074234_1109	All Organisms → Viruses → Predicted Viral	3648
Ga0074234_1221	Not Available	1369
Ga0074234_1303	Not Available	665
Ga0074234_1315	Not Available	973
Ga0074234_1791	All Organisms → Viruses → Predicted Viral	4626

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0074234_1109	Ga0074234_11091	F075084	MRPCHKDLCLMYSLGVDYARLLDFTEQNPTGKLFRRAERAMIYARRLLASWYGYDTRMLMETALRRILKKSIIYCNLVKRLGLESQYCKRYTYYDEVPCELVTEYDVEVAYADIMHMITNYNNETTSEILTNMTKECSTYEVR*
Ga0074234_1221	Ga0074234_12211	F087445	MSSSSVKPGDDIINRLMNMSDYELKRVFKTIPIDKRLALALDAIQEYQSIQSKFNNLLNGLAMNAPKVKEVMDTARKNRKPMDRLADMFMDMMETMLKSKAMSLTDEDKAKFREKLKEVMQDEE*
Ga0074234_1221	Ga0074234_12213	F076264	MSAISSGIQSLVNGLQNLFVALVDVFGNAINAIGNTLSSLAQPIGYLVGVLAVFGSLVGIILYVFRGRGGIGGLVGSIKNFFTGFI*
Ga0074234_1303	Ga0074234_13032	F087442	MMREGLVKAGNLIVDCKPCYIAGTGFTKDDMYVVSEGNVVFKWYDKIALITVSQEGVKITLVDVIDVRFLVERNENCMVTKL*
Ga0074234_1303	Ga0074234_13033	F080245	VIFVWTAKVVMPGFREEIFVSPALINSLGELTEDVYEVGMFAVPHAGHALLFLPTMVINLNDNLMKQLEDT
Ga0074234_1315	Ga0074234_13152	F063848	KMAKAYDQSATRRNQRAVNGFAILKQVQQTVRDYLNEASEAMKKPIIAQLGVEFLGIAMAYLRASNEGFSSYALTGRVAQIATLKATGIISSTELTCAQAGEIINGMLKKVSGMSADPLTFTENDGICEATPANPMPKLSIASPSTGYTVSLNDVLKAKTPEEVLMGK*
Ga0074234_1791	Ga0074234_17915	F063846	MRINTDALLGLGAVAVLTAILLFIAWYHTYPQLTCAYVTTHYANHVLTVLVNFTCNGNLYAVWDVNAGNCIYNYNASQQLPTVTNSLISWSNYVAWNFTFTCTKPPGNVTVDLTTPAGAGYAQCHYLLTIPTNTTAAVKC*