Scaffold Ga0070682_100000027

Overview

Basic Information

• Taxon OID: 3300005337
• Scaffold ID: Ga0070682_100000027
• Source Dataset Name: Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 188799
• Total Scaffold Genes: 164
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 111 (67.68%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan, Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008267	Metagenome	336	Y
F024926	Metagenome	204	Y
F045665	Metagenome	152	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070682_100000027133	F045665	AGAAG	MNEQEPSTARPFVFTVIEDDGINVTIEVSEEDYQADLAAGIDEEATMKPGRYKMKRGGFLKRHPELKLEEKQRA*
Ga0070682_10000002744	F024926	GGAGG	MIAPKNMAGGMEFLVTVGISAAAGLLAFLFVSVVVHLLGLTNG*
Ga0070682_10000002785	F008267	GGAG	MSRDQGTNDRLTKLLGNLISLTRAGDLHWERQLGSAHRYAKWNNNLLILGPAAPLNETKIPRYLFLTPFDSPNCLEICSNDEVLGAQLLELVQEVEQASSQEPPTDPFGISDEELRRLTR