Scaffold Ga0070682_100000004

Overview

Basic Information

• Taxon OID: 3300005337
• Scaffold ID: Ga0070682_100000004
• Source Dataset Name: Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 388780
• Total Scaffold Genes: 356
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 208 (58.43%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan, Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001519	Metagenome / Metatranscriptome	679	Y
F004159	Metagenome / Metatranscriptome	450	Y
F008503	Metagenome	332	Y
F087671	Metagenome	110	Y
F105781	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070682_100000004105	F004159	AGGAG	MATNNQDDHERAAAGLDFDFPMREKAASLGQKVAENGPEALLDEIENLLPEAWRDQITNFPIVAMILGVGVGVFLGMKKGDEIIAAGGSLLSAAAISNVTQAMERAVGGSND*
Ga0070682_100000004166	F001519	GGAG	MTLVNSLCAEISIYQGVGEATGVVVERSAIRGKKGLCKSMRDLAIKSRVLGDGYYYIPMDLWPKSKEPVTVHKHEWTVIGSIPRTSRSGRKRIKRATAS*
Ga0070682_100000004297	F008503	N/A	MKKALVVVAGIVLAVWVISWFRNEGAVATSGARPWPGKMGTLDSVADRFPPLQANDASVKLKAFANALPKNDAVGEFVTREIARGELTIGQPPVLPDVSAMRELLLREPIVWARVVGIGGDDETQSTRAAQMTAARALVASALTKARANDPAAWEDLHAAWKLARTLDGHPQVMVQTAALSIARMINAVAWKMPLPAPAWLGELQQRDSVRPLLDAFQYQTASYAKDGLRIFPTKMLAGSIDRDRAIAAVLVDETRCDVNARANEVGTDLTSVWRRAFRYRAEREATANALRVREGKPIEAASRCSDGGWTFDGTTLHFSREIATAPPDRPMPLVLRIKP*
Ga0070682_100000004299	F087671	AGTAGG	MKSCEQHRHEHRQLPCPWPDCPNGEGAADLFEVPRHTGAGMMTRAEGHFDVTPQPRKFERKMWTCEKCGVSGWHWVEAGVDPHLDRCPHRRPGTVKPLRKA*
Ga0070682_10000000487	F105781	GGAG	MRREASQGNPWLIAIAVLAFACPRQEPLTAQKAEEILRSFQYASEPIYAEVPQRVWWSPKAPQDDYDVKALQTLRNLERTGYLTVTESHTADGTTSYTGKVTPKGFTLIGTAPSNRGPCFRATICFKTYDHLQNFERHPAEPTVGHGDLMWHYERPTPMYELFTTKIDKELNKPYSSAVSFYWKDHAWHFDVMIRKARG*