Scaffold Ga0066388_101276439

Overview

Basic Information

• Taxon OID: 3300005332
• Scaffold ID: Ga0066388_101276439
• Source Dataset Name: Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1263
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location

• Location Name: Panama: Oeste
• Coordinates
  • Lat. (^o): 9.1086
  • Long. (^o): -79.8436

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000257	Metagenome / Metatranscriptome	1447	Y
F003372	Metagenome / Metatranscriptome	491	Y
F033728	Metagenome / Metatranscriptome	176	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066388_1012764391	F033728	AGGAG	MGADDQAESRLPAIAKIKQDLAWRSVAGVPMSQIVITRQQAEELIAEIERLQARTHK*
Ga0066388_1012764392	F003372	AGGA	MAITQGKMPFVFGMVVLAILLIAAPAAHAACRSPKNICKHFDGCLQRTSDSNNKDADGIRAGVKARNGQIVLASAETCARDLGRKQQWDKWARGCSELEFVQIAKVGLELGKVHCDRYSQ
Ga0066388_1012764393	F000257	GGAGG	MDEMTHRKREIIGLRNERDFPHVVELALPPEGFRSVLLEIDAFHRERRIPVRRGRNRYEGKQVYIRFCFPHTATADAFRNRFGGECLAHAPTKPETRTSATS*