Basic Information | |
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Taxon OID | 3300005332 Open in IMG/M |
Scaffold ID | Ga0066388_100592259 Open in IMG/M |
Source Dataset Name | Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1733 |
Total Scaffold Genes | 4 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions |
Source Dataset Sampling Location | ||||||||
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Location Name | Panama: Oeste | |||||||
Coordinates | Lat. (o) | 9.1086 | Long. (o) | -79.8436 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F001696 | Metagenome / Metatranscriptome | 650 | Y |
F015902 | Metagenome / Metatranscriptome | 251 | N |
F081720 | Metagenome / Metatranscriptome | 114 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0066388_1005922591 | F001696 | N/A | ITGAAFIGTVGLDWHFAGIAPIHAAGSSDLVLRNVNSDAFEVYDIAGNTLVGAASLGAVGLDWSLGGFAADPPTDNSGNVGQLVQAMAGFGGGSGAAESLNAAPLGTDTSQQTFLTTPQHA* |
Ga0066388_1005922592 | F081720 | AGGAG | MNIEDSRTIARFQYLLTESLVAKRLGHWRPELKDALYQMMFEELEQRDLKKTPESRNVMLRADQHAEWLAGLARLCNPNHPLPLSPKETERAGTLSALEKAA* |
Ga0066388_1005922593 | F015902 | AGGGGG | MRKILTSLLFVAAVLSLASSEASAMNFVCQAVGPRSVAYGRAFFAADAKWQALLRCERYSGICIISYCVPMY* |
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