Scaffold Ga0070683_100548797

Overview

Basic Information

• Taxon OID: 3300005329
• Scaffold ID: Ga0070683_100548797
• Source Dataset Name: Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1105
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan, Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012170	Metagenome / Metatranscriptome	283	Y
F077127	Metagenome / Metatranscriptome	117	Y
F089248	Metagenome / Metatranscriptome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070683_1005487971	F077127	N/A	RYARYMLSWIWIPVLYVLAFGLFGWLGGIAAAGDAIARWGRETAESRRRVVSPSC*
Ga0070683_1005487972	F012170	GGAGG	MATRTPLRNDERSRPEPSHGLLERAEEWVEETSLAPEDEPEEGVPWHAVALLLTALALLIAVEITLAFGIAKLVTGHAY*
Ga0070683_1005487973	F089248	AGGA	MRMRILMALSVLLLLSVGIATAAAAPKRFRASQQLCESNGGTFSTRASSSFFAPFYKQQGVLWTCNGYGGGSTASQALVQSCANDGGQASSTLDSGFATCWKHQPF*