Scaffold Ga0070683_100000042

Overview

Basic Information

• Taxon OID: 3300005329
• Scaffold ID: Ga0070683_100000042
• Source Dataset Name: Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 115507
• Total Scaffold Genes: 132
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 84 (63.64%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan, Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002324	Metagenome	571	Y
F014455	Metagenome / Metatranscriptome	263	Y
F095945	Metagenome	105	Y
F101403	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070683_100000042105	F101403	AGG	VSWLASLPHQIPFRAASAATRIDDKTIEGLYVCTADDRMPPSVMAVEAMAQLGGGLAFTSQGFLTGIDRCEVDRAIEAGDVIRFVVTLDANFGGTFRFTGSGAIDGVEVIRGRFYLASPPG*
Ga0070683_10000004246	F002324	GGAGG	MGEIKLFQVCYEGELTLAVSEAMRRLGAEPNFDQSWNVWLPEGGHAELLVRYLRIEVGDEARVLIGCSQFTSTRDFLLIRHSLTPGADYSELHDAIGRLGVVVDLPFESTFVVQSDDRTDVNTLGMALGELCPDDALFVTGISHDWAYCDGTTSRMYVAEQEPKSIQFRTF*
Ga0070683_1000000427	F095945	GGA	MIAVLAFFFATAFPSTSKTSWMRPESFHLTIGMNRAEAVKALESNGWKTKKGDSAGQILVDYADDKSLTLQFAGERLTSIRFELFTILQEAPKAFEEERVFLRESLGKPRKATKKVVIYDHKLPNVMAVLSADPKSEQAQKGVGMLVVRYYDPVK*
Ga0070683_10000004270	F014455	AGGAGG	MLHFLKKLLMFRVGQKTTRGVARSIGLGKIATVVGLIGGYKHMRKHA*