Scaffold Ga0072500_179894

Overview

Basic Information

• Taxon OID: 3300005300
• Scaffold ID: Ga0072500_179894
• Source Dataset Name: Hot spring microbial communities from Great Boiling Spring, Nevada - cellulolytic enrichment S 77C
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5542
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (54.55%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Candidatus Wolframiiraptoraceae → Candidatus Terraquivivens → Candidatus Terraquivivens tikiterensis (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Hot Spring Microbial Communities From Great Boiling Spring, Nevada

Source Dataset Sampling Location

• Location Name: Great Boiling Spring, Nevada
• Coordinates
  • Lat. (^o): 40.71458
  • Long. (^o): -119.369659

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027047	Metagenome	196	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0072500_1798947	F027047	GAGG	MDTSSLIIAIISAVVYSLSMYVKKHLNPDNPQNFDTVKFITTVIWGVLIGGFLAISGLPVTEMSVEEQFLAYAGLIAITENIIKSILRALTRNQSEDSDTTNQ*