Sample 3300005300

Overview

Basic Information
IMG/M Taxon OID	3300005300 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0060837 \| Gp0052399 \| Ga0072500
Sample Name	Hot spring microbial communities from Great Boiling Spring, Nevada - cellulolytic enrichment S 77C
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	Y
Use Policy	Open

Dataset Contents
Total Genome Size	125361107
Sequencing Scaffolds	10
Novel Protein Genes	10
Associated Families	9

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	6
Not Available	2
All Organisms → cellular organisms → Archaea	1
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Candidatus Wolframiiraptoraceae → Candidatus Terraquivivens → Candidatus Terraquivivens tikiterensis	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Hot Spring Microbial Communities From Great Boiling Spring, Nevada
Type	Environmental
Taxonomy	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Hot Spring Microbial Communities From Great Boiling Spring, Nevada

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	aquatic biome → hot spring → spring water
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline)

Location Information
Location	Great Boiling Spring, Nevada
Coordinates	Lat. (^o)	40.71458	Long. (^o)	-119.369659	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F014385	Metagenome / Metatranscriptome	263	Y
F019254	Metagenome	231	Y
F027047	Metagenome	196	Y
F028182	Metagenome / Metatranscriptome	192	N
F056638	Metagenome / Metatranscriptome	137	N
F063403	Metagenome / Metatranscriptome	129	N
F080678	Metagenome	115	N
F083525	Metagenome / Metatranscriptome	112	N
F084856	Metagenome / Metatranscriptome	112	N

Family

Category

Number of Sequences

3D Structure?

F014385

Metagenome / Metatranscriptome

263

F019254

Metagenome

231

F027047

Metagenome

196

F028182

Metagenome / Metatranscriptome

192

F056638

Metagenome / Metatranscriptome

137

F063403

Metagenome / Metatranscriptome

129

F080678

Metagenome

115

F083525

Metagenome / Metatranscriptome

112

F084856

Metagenome / Metatranscriptome

112

Scaffold	Taxonomy	Length	IMG/M Link
Ga0072500_126005	All Organisms → cellular organisms → Bacteria	4644	Open in IMG/M
Ga0072500_140253	Not Available	14747	Open in IMG/M
Ga0072500_142303	All Organisms → cellular organisms → Bacteria	20377	Open in IMG/M
Ga0072500_143923	All Organisms → cellular organisms → Bacteria	699	Open in IMG/M
Ga0072500_144104	All Organisms → cellular organisms → Bacteria	649	Open in IMG/M
Ga0072500_147505	All Organisms → cellular organisms → Bacteria	1645	Open in IMG/M
Ga0072500_150339	Not Available	24117	Open in IMG/M
Ga0072500_172484	All Organisms → cellular organisms → Archaea	11246	Open in IMG/M
Ga0072500_173685	All Organisms → cellular organisms → Bacteria	899	Open in IMG/M
Ga0072500_179894	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Candidatus Wolframiiraptoraceae → Candidatus Terraquivivens → Candidatus Terraquivivens tikiterensis	5542	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0072500_126005

All Organisms → cellular organisms → Bacteria

4644

Open in IMG/M

Ga0072500_140253

Not Available

14747

Open in IMG/M

Ga0072500_142303

All Organisms → cellular organisms → Bacteria

20377

Open in IMG/M

Ga0072500_143923

All Organisms → cellular organisms → Bacteria

699

Open in IMG/M

Ga0072500_144104

All Organisms → cellular organisms → Bacteria

649

Open in IMG/M

Ga0072500_147505

All Organisms → cellular organisms → Bacteria

1645

Open in IMG/M

Ga0072500_150339

Not Available

24117

Open in IMG/M

Ga0072500_172484

All Organisms → cellular organisms → Archaea

11246

Open in IMG/M

Ga0072500_173685

All Organisms → cellular organisms → Bacteria

899

Open in IMG/M

Ga0072500_179894

All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Candidatus Wolframiiraptoraceae → Candidatus Terraquivivens → Candidatus Terraquivivens tikiterensis

5542

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0072500_126005	Ga0072500_1260052	F019254	MPNERIHEALSHLRDEWPLRVLLSALAERVAELAALLGRAEAQNLPPEFLTRIRAIEEEMRELSLLCQRPPAPEGRRKKKKVEDLPLF*
Ga0072500_140253	Ga0072500_1402533	F084856	MSGTFNLTIVTHIYTSQHAEALKETLPEWVRLSPSQILVGYYQKKLQPSDFQCLETYDGVELVPIDSSSYGAAYDVLLERVVGKPILILAPYVIPKDWFVGSVSKWFESYAIIGHYKQPRILVADAILMPLIAPVVVELGRLQMDCIAVREDVPRSVGYHEWWFGSILVRARPGAFLLYNALAAGYPVLTLPYNCKPVRYVRNPERQSSKAHKK*
Ga0072500_142303	Ga0072500_14230330	F080678	MFVKKVDVRTVPITQAYENWECIWLGEREIRRFLAYTGLTAPPYNLRVENFLKFPYLRGMTARRFVQKLRRLGVTWSWNNDAMRRSILLAIGYRLLEIEEFEHYRIFGRKEVSVNV*
Ga0072500_143923	Ga0072500_1439232	F014385	REVGDWWDLVQLALVRSALEQLSPEEEQALWLYAEGARLTKQQHALAEATLAKVRRMLNLE*
Ga0072500_144104	Ga0072500_1441041	F083525	LATLPVREGAAAALQPYYHPYFVAVLWEGRTRCDSLWRSLKGDVGAILPTVQGTTPYARLYWTGYALGSAPVNVNMRVLARAVDHNGVPLGSGWRPIGQATIQTPPLRWFRVEIPEGHWDEYRIEVRSATPRLVYSRVIASQGYWKE*
Ga0072500_147505	Ga0072500_1475053	F028182	MPKVSISEAARRLDTTEEVIREWIRLGLLDVEPPPAKPRRTRELNLAFQPTSATPEPKVDLEQLYEVAEREGWLLLSLEAWDAADSEP*
Ga0072500_150339	Ga0072500_1503396	F063403	MEGNINRTEALRELRAAIRSVRRTPIKIPFGNSDKFFIEIRIPKFSERLDIQMAAELFLGGFDSSERLVKSLPPLITSFRLPAEDEEGNLMQAVYNAEPLPDLPVLQLEPSDLFSDESAFNATPVLMTLIITTLLTLSGRTQNVAAGMNELLELFPGTNQNATDLLDKGSSRVSGSE*
Ga0072500_172484	Ga0072500_1724845	F027047	LSSLGIAVLSAVAYSLSMYVKKHLNTDNPQSFDATKFLTTLIWGIIVGAILQFSGVPITEQSVEEQFIAYAGLIAITENIIKAIIRAVDR*
Ga0072500_173685	Ga0072500_1736851	F056638	MPSSWLQRCRDEYYTENPVVWLLAKTESELCLRQISAPEPAEAGSAPSRLQLLKSDPVYSTRYFLWTDEKEFERTLLVPWHLPSNRWMPVSDQIYLAVASLITMTALVIHYALAKSPVWVGAVGVGVVVLAFFLPMARPMLALHSLAQTLTTETPLHIGVSRLTPAHLVYGALLYGVGRAARASAVYGILPALLVATIAQGTVFRGLPTAILLWGYSVCVGALWILCTLAIVYGQATRLYGASRDGGGWPGDPR
Ga0072500_179894	Ga0072500_1798947	F027047	MDTSSLIIAIISAVVYSLSMYVKKHLNPDNPQNFDTVKFITTVIWGVLIGGFLAISGLPVTEMSVEEQFLAYAGLIAITENIIKSILRALTRNQSEDSDTTNQ*

Scaffold ID

Protein ID

Family

Sequence

Ga0072500_126005

Ga0072500_1260052

F019254

MPNERIHEALSHLRDEWPLRVLLSALAERVAELAALLGRAEAQNLPPEFLTRIRAIEEEMRELSLLCQRPPAPEGRRKKKKVEDLPLF*

Ga0072500_140253

Ga0072500_1402533

F084856

MSGTFNLTIVTHIYTSQHAEALKETLPEWVRLSPSQILVGYYQKKLQPSDFQCLETYDGVELVPIDSSSYGAAYDVLLERVVGKPILILAPYVIPKDWFVGSVSKWFESYAIIGHYKQPRILVADAILMPLIAPVVVELGRLQMDCIAVREDVPRSVGYHEWWFGSILVRARPGAFLLYNALAAGYPVLTLPYNCKPVRYVRNPERQSSKAHKK*

Ga0072500_142303

Ga0072500_14230330

F080678

MFVKKVDVRTVPITQAYENWECIWLGEREIRRFLAYTGLTAPPYNLRVENFLKFPYLRGMTARRFVQKLRRLGVTWSWNNDAMRRSILLAIGYRLLEIEEFEHYRIFGRKEVSVNV*

Ga0072500_143923

Ga0072500_1439232

F014385

REVGDWWDLVQLALVRSALEQLSPEEEQALWLYAEGARLTKQQHALAEATLAKVRRMLNLE*

Ga0072500_144104

Ga0072500_1441041

F083525

LATLPVREGAAAALQPYYHPYFVAVLWEGRTRCDSLWRSLKGDVGAILPTVQGTTPYARLYWTGYALGSAPVNVNMRVLARAVDHNGVPLGSGWRPIGQATIQTPPLRWFRVEIPEGHWDEYRIEVRSATPRLVYSRVIASQGYWKE*

Ga0072500_147505

Ga0072500_1475053

F028182

MPKVSISEAARRLDTTEEVIREWIRLGLLDVEPPPAKPRRTRELNLAFQPTSATPEPKVDLEQLYEVAEREGWLLLSLEAWDAADSEP*

Ga0072500_150339

Ga0072500_1503396

F063403

MEGNINRTEALRELRAAIRSVRRTPIKIPFGNSDKFFIEIRIPKFSERLDIQMAAELFLGGFDSSERLVKSLPPLITSFRLPAEDEEGNLMQAVYNAEPLPDLPVLQLEPSDLFSDESAFNATPVLMTLIITTLLTLSGRTQNVAAGMNELLELFPGTNQNATDLLDKGSSRVSGSE*

Ga0072500_172484

Ga0072500_1724845

F027047

LSSLGIAVLSAVAYSLSMYVKKHLNTDNPQSFDATKFLTTLIWGIIVGAILQFSGVPITEQSVEEQFIAYAGLIAITENIIKAIIRAVDR*

Ga0072500_173685

Ga0072500_1736851

F056638

MPSSWLQRCRDEYYTENPVVWLLAKTESELCLRQISAPEPAEAGSAPSRLQLLKSDPVYSTRYFLWTDEKEFERTLLVPWHLPSNRWMPVSDQIYLAVASLITMTALVIHYALAKSPVWVGAVGVGVVVLAFFLPMARPMLALHSLAQTLTTETPLHIGVSRLTPAHLVYGALLYGVGRAARASAVYGILPALLVATIAQGTVFRGLPTAILLWGYSVCVGALWILCTLAIVYGQATRLYGASRDGGGWPGDPR

Ga0072500_179894

Ga0072500_1798947

F027047

MDTSSLIIAIISAVVYSLSMYVKKHLNPDNPQNFDTVKFITTVIWGVLIGGFLAISGLPVTEMSVEEQFLAYAGLIAITENIIKSILRALTRNQSEDSDTTNQ*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300005300: Hot spring microbial communities from Great Boiling Spring, Nevada - cellulolytic enrichment S 77C

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences