NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0072500_140253

Scaffold Ga0072500_140253


Overview

Basic Information
Taxon OID3300005300 Open in IMG/M
Scaffold IDGa0072500_140253 Open in IMG/M
Source Dataset NameHot spring microbial communities from Great Boiling Spring, Nevada - cellulolytic enrichment S 77C
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14747
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (88.89%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Hot Spring Microbial Communities From Great Boiling Spring, Nevada

Source Dataset Sampling Location
Location NameGreat Boiling Spring, Nevada
CoordinatesLat. (o)40.71458Long. (o)-119.369659Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F084856Metagenome / Metatranscriptome112N

Sequences

Protein IDFamilyRBSSequence
Ga0072500_1402533F084856GAGMSGTFNLTIVTHIYTSQHAEALKETLPEWVRLSPSQILVGYYQKKLQPSDFQCLETYDGVELVPIDSSSYGAAYDVLLERVVGKPILILAPYVIPKDWFVGSVSKWFESYAIIGHYKQPRILVADAILMPLIAPVVVELGRLQMDCIAVREDVPRSVGYHEWWFGSILVRARPGAFLLYNALAAGYPVLTLPYNCKPVRYVRNPERQSSKAHKK*
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