Scaffold Ga0065714_10021402

Overview

Basic Information

• Taxon OID: 3300005288
• Scaffold ID: Ga0065714_10021402
• Source Dataset Name: Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1339
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere → Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan State University, Usa

Source Dataset Sampling Location

• Location Name: Kellogg Biological Station, Michigan State University
• Coordinates
  • Lat. (^o): 42.406189
  • Long. (^o): -85.40016

Associated Families

Family	Category	Number of Sequences	3D Structure?
F046806	Metagenome	150	N
F094834	Metagenome	105	Y
F104372	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0065714_100214022	F094834	AGGAG	MSHLPTCRTRKXLTGNVWVYYSEPDRNCTDQSHVDAYTQENQ*
Ga0065714_100214025	F046806	GAGG	MSPVSGMHAAWLVRRVCAQHVEEAPLNETGGEYVARSIRSCAALTATLGTRVNPIFMHEVIRLLEELHTVHAGTHADLDQNAALTVNNAPDLIDRLQQQISAAVSELLAHTEPLKERVAA
Ga0065714_100214026	F104372	N/A	TDGGSGVRDMTVTRASRRGAYTLPVEHGRPRTPKPGYEPISTDEWAEIIHLARQQRTEEAITAYARKRTA*