Scaffold Ga0065711_1041157

Overview

Basic Information

• Taxon OID: 3300005287
• Scaffold ID: Ga0065711_1041157
• Source Dataset Name: Hoatzin crop microbial communities from Cojedes, Venezuela - Epithelial fraction 12
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16367
• Total Scaffold Genes: 31
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (48.39%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Craniata → Vertebrata → Gnathostomata → Teleostomi → Euteleostomi → Sarcopterygii → Dipnotetrapodomorpha → Tetrapoda → Amniota → Sauropsida → Sauria → Archelosauria → Archosauria → Dinosauria → Saurischia → Theropoda → Coelurosauria → Aves → Neognathae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Birds → Digestive System → Crop → Lumen → Hoatzin Crop → Hoatzin Crop Microbial Communities From Cojedes, Venezuela

Source Dataset Sampling Location

• Location Name: Cojedes, Venezuela
• Coordinates
  • Lat. (^o): 8.956944
  • Long. (^o): -68.299167

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004001	Metagenome	457	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0065711_10411572	F004001	AGAAG	LHWNRLPREAVESPPLEMLKKYVDVALQTWFKRHGGDGLVVGLDDLGGLFQP*