3300005287: Hoatzin crop microbial communities from Cojedes, Venezuela - Epithelial fraction 12

Overview

Basic Information

• IMG/M Taxon OID: 3300005287
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0060822 | Gp0051908 | Ga0065711
• Sample Name: Hoatzin crop microbial communities from Cojedes, Venezuela - Epithelial fraction 12
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 1305838063
• Sequencing Scaffolds: 3
• Novel Protein Genes: 4
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Craniata → Vertebrata → Gnathostomata → Teleostomi → Euteleostomi → Sarcopterygii → Dipnotetrapodomorpha → Tetrapoda → Amniota → Sauropsida → Sauria → Archelosauria → Archosauria → Dinosauria → Saurischia → Theropoda → Coelurosauria → Aves → Neognathae	1
Not Available	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Hoatzin Crop Microbial Communities From Cojedes, Venezuela
• Type: Host-Associated
• Taxonomy: Host-Associated → Birds → Digestive System → Crop → Lumen → Hoatzin Crop → Hoatzin Crop Microbial Communities From Cojedes, Venezuela

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal proximal gut

Location Information

• Location: Cojedes, Venezuela
• Coordinates
  • Lat. (^o): 8.956944
  • Long. (^o): -68.299167
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004001	Metagenome	457	Y
F026176	Metagenome / Metatranscriptome	198	N
F053715	Metagenome / Metatranscriptome	140	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0065711_1041157	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Craniata → Vertebrata → Gnathostomata → Teleostomi → Euteleostomi → Sarcopterygii → Dipnotetrapodomorpha → Tetrapoda → Amniota → Sauropsida → Sauria → Archelosauria → Archosauria → Dinosauria → Saurischia → Theropoda → Coelurosauria → Aves → Neognathae	16367
Ga0065711_1193621	Not Available	547
Ga0065711_1194635	Not Available	544

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0065711_1036248	Ga0065711_103624827	F004001	ESPSLEVFKKRADMALQDWFSRHGAVVLIVGLDDFRGLFQPVIL*
Ga0065711_1041157	Ga0065711_10411572	F004001	LHWNRLPREAVESPPLEMLKKYVDVALQTWFKRHGGDGLVVGLDDLGGLFQP*
Ga0065711_1193621	Ga0065711_11936211	F053715	MNMYFPGANSQNIPKSYDPDVLEGNWFEDRCTSTYDNKKKRDFLLPNPNQWQYDTTYQELGHHCKDYPTLKKHFQICNDNFINFQGMDYNMFITTNKHAMDPRYRLTFREPVNTRDYYKYRQPELEKYRMEWTHKEQLFDTTYQKDILDKIPLFQNKTFNITALN
Ga0065711_1194635	Ga0065711_11946351	F026176	YLGFVSSIKAENKISESYGKETAQSLAGTIPKGADVPPYVRYTSTYREDYKDQSKVRTQSTAQLLGITQPKVEYKKSIPVDTINKFFGVHPDNNSTEKEKCIQEKQSGEKDYEKFWNFVNQNDLDYVEKKPDDINESNMAYWGVPHSVQELHPELKYDPIPGYMGTYKHIIPENIFGLTY