Scaffold Ga0073581_115482

Overview

Basic Information

• Taxon OID: 3300005264
• Scaffold ID: Ga0073581_115482
• Source Dataset Name: Hydrothermal sediment microbial communities from Guaymas Basin, California, USA 4572. Combined assembly of Gp0115316 and Gp0146562
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Texas, Austin
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5311
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (100.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Sediment → Hydrothermal Sediment Microbial Communities From Guaymas Basin, California, Usa

Source Dataset Sampling Location

• Location Name: Guaymus Basin
• Coordinates
  • Lat. (^o): 27.013056
  • Long. (^o): -111.519722
  • Depth (m): 0 to .12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029954	Metagenome	186	N
F035145	Metagenome	172	Y
F049343	Metagenome	146	Y
F050065	Metagenome	145	Y
F066330	Metagenome	126	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0073581_11548210	F029954	AGG	MELKVREYKFNDGERKVEYVIPPTNTPFFSVVFSKRGGVRMIAIHQRVLEYHEAVVLISLLCGVIKNERGNGYRDGSSTLYH*
Ga0073581_11548215	F066330	AGG	MAEGEKRKVVVSVALSVDEYLRLEEAVVRKHGRKWGVFSEFVREAIKKAVEEVLQARSEK
Ga0073581_1154822	F049343	AGGAGG	MEWSRLRDKLRKGEWHAFSAACFIAGVVVGKEITTLGRAEPILALTAVGAVLLAYWLALLTATIIAEIKEAPKTI*
Ga0073581_1154823	F035145	AGGAGG	LEKLSEFMRRDYNLKTIITEECCDLVRVEVICLTARTSFPLLSLTYNRHTDNFILTVERKFITQQSTLKALIEALESVKEVMLNGMEQIER*
Ga0073581_1154824	F050065	GGA	MNMLKATASMEQQILLAIAYLKGLLRDARRRGDKEVVRYIGEIIGVYEARLQPQNNNN*